RetrogeneDB ID: | retro_pcap_165 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_12873:13835..14558(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSPCAG00000006353 | ||
Aliases: | None | ||
Description: | calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481] |
Percent Identity: | 67.22 % |
Parental protein coverage: | 90.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VLGGLISGAGGGGGGGGGGGGGGGGGGGTAMRILGGVISAISEAAA-QYNPEPPPPRTHFSNIEANESEE |
.L.G...G.GG..GG...GGG.....GG....I.GG....ISEAAA.QY.PEPPP...HF...EANESEE | |
Retrocopy | LLEGADRGLGGALGGLLAGGGQRAAAGGNIRGIVGGLVNFISEAAAAQYTPEPPPVQQHFTQVEANESEE |
Parental | VRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGLDTCRSMVAVMDSDTTGKLGFEEFKYL |
VR.FR..FAQLAG.DMEV.AT.LMNILNKV...HPDLKT.GF..D.CRS.V.VMD.DTTGKLGFEEFKYL | |
Retrocopy | VRRFRQQFAQLAGPDMEVGATDLMNILNKVLAKHPDLKTSGFSVDACRSIVSVMDNDTTGKLGFEEFKYL |
Parental | WNNIKKWQAIYKQFDADRSGTICSQELPGAFQAAGFRLNEHLYNMIIRRYSDEAGNMDFDNFISCLVRLD |
WNNIKKWQ..YKQ.D..RSG......L.GA.QAAGF.LNEHLY.MI.RRY..E.G.MDF.NFI.CLVRLD | |
Retrocopy | WNNIKKWQCVYKQYDSNRSGYLEHSQLRGALQAAGFQLNEHLYQMIVRRYAYEDGSMDFNNFILCLVRLD |
Parental | AMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS |
AMFRAFKSLD.D..G.I.V..QEWL.LTMYS | |
Retrocopy | AMFRAFKSLDQDADGLIRVSVQEWLELTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |