RetrogeneDB ID: | retro_fcat_1691 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:35205505..35206132(+) | ||
Located in intron of: | ENSFCAG00000027346 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSFCAG00000014149 | ||
Aliases: | None | ||
Description: | calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481] |
Percent Identity: | 74.64 % |
Parental protein coverage: | 78.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ILGGVISAISEAAA-QYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVT |
I.GG....ISEAAA.QY.PEPPP...H..N.EANESEEVR.FR..FAQLAG.DMEV.AT.LMNILNKV.. | |
Retrocopy | IVGGIVNFISEAAAAQYTPEPPPTQQHFTNVEANESEEVRRFRQQFAQLAGPDMEVGATDLMNILNKVLS |
Parental | RHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFQEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPAAFE |
.H.DLKTDGF..DTCRS.V.VMDSDTTGKLGF.EFKYLWNNIKKWQ..YKQ.D.D.SG..GSS.L..A.. | |
Retrocopy | KHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGALQ |
Parental | AAGFHLNEHLYNMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS |
AAGF.LNE.LY.MIIRRY.DE.G.MDF.NFISCLVRLDAMFRAFKSLD.D..G..QV.IQEWLQLTMYS | |
Retrocopy | AAGFQLNEQLYQMIIRRYADEDGSMDFNNFISCLVRLDAMFRAFKSLDRDAGGLVQVSIQEWLQLTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 138 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 184 .16 RPM |
SRP017611_liver | 0 .00 RPM | 60 .35 RPM |