RetrogeneDB ID: | retro_sara_215 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_854:75148..75566(+) | ||
Located in intron of: | ENSSARG00000011914 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSSARG00000004266 | ||
Aliases: | None | ||
Description: | calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481] |
Percent Identity: | 75. % |
Parental protein coverage: | 54.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTINSSELPGAFQ |
.H.DLKTDGF..DTCRS.V.VMDSDTTGKLGFEEFKYLWNNIKKWQ..YKQ.D.D..G...SS.L.GA.Q | |
Retrocopy | KHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQHDRDHAGILRSSQLRGALQ |
Parental | A-AGFQLNEHLYNMIIRRYSDEAGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS |
A.AGFQLNE.L..MI..RY.DE.G.MDF.NFISCLVRLDAMFRAFKSLD.D..G.IQV.IQ.WLQ.TMYS | |
Retrocopy | A>AGFQLNEQLHQMIVLRYTDEDGSMDFNNFISCLVRLDAMFRAFKSLDRDADGLIQVSIQDWLQMTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |