RetrogeneDB ID: | retro_btau_1126 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 27:28120908..28121370(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSBTAG00000014872 | ||
Aliases: | CAPNS1, CAPN4 | ||
Description: | Calpain small subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:P13135] |
Percent Identity: | 57.32 % |
Parental protein coverage: | 58.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PPRTHYSNIEANESEEVRQFRRLFAQLAGDD-MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAV |
PP..........E.EEVRQF.R.FA.L..D......ATEL...LN.V.T.HPDLKTD..GIDTCRS.VAV | |
Retrocopy | PPLARLTPASRPEGEEVRQFPRIFA*LTVDT<RALTATELSALLNHVITQHPDLKTDRLGIDTCRSVVAV |
Parental | MDSDTTGKLGFEEFKYLWNNIKKWQAVYKQFDVDRSGTIGSSEL-PGAFEAAGFRLNEHLYNMIIRRYSD |
.DS.TT.KL.FEEF..LWN.I.KWQ..Y....V...GT.GS.EL.PG.FEA.G..LNE.L...I.R..SD | |
Retrocopy | IDSVTTSKLDFEEF*CLWNDIQKWQEIY-SLTVGGLGTVGSGEL>PGTFEASGLYLNEALHDSIVRSHSD |
Parental | EGGNMDFDNFISCLVRL |
.GGN.D.D.FIS.LVRL | |
Retrocopy | KGGNVDVDSFISSLVRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 29 .49 RPM |
ERP005899_muscle | 0 .00 RPM | 192 .47 RPM |
SRP017611_brain | 0 .00 RPM | 157 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 214 .86 RPM |
SRP017611_liver | 0 .00 RPM | 51 .80 RPM |
SRP030211_testis | 0 .02 RPM | 300 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_495 |