RetrogeneDB ID: | retro_acar_205 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | LGc:2350585..2351185(+) | ||
Located in intron of: | ENSACAG00000016591 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSACAG00000000511 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.5 % |
Parental protein coverage: | 92.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SEAAAQYNPEPPPP-RSHFSQVESNESDEVRQFRRLFTQLAGEDMEVSATELMNILNKVVTRHPDLKTDG |
SEAAAQY.PEPPPP.RSHF..VE.NES.E.RQFRRLF.QLAG.DM.V..TELM.ILNKV..RH.DLK..G | |
Retrocopy | SEAAAQYTPEPPPPARSHFANVEANESEEMRQFRRLFAQLAGDDMAVCPTELMGILNKVMARHQDLKSQG |
Parental | FGIDTCRSMVAVMDSDTTGKLGFDEFKYLWNNIKKWQGIYKRFDADRSGTIGSNELPGAFEAAGFRLNEQ |
F..DTCRSMV.VMDSDTTGKL.F..F.YLWNNIKKWQ..YKR.....SGTI....LP.AF.AAGF...EQ | |
Retrocopy | FSLDTCRSMVSVMDSDTTGKLDFYQFRYLWNNIKKWQAVYKRYASPNSGTIEMARLPEAFKAAGFNMHEQ |
Parental | LYSMMVRRYSDENGNMDFDNFISCLVRLDAMFRAFKSLDRDGSGQIRVTLREWLQLTMYS |
LY..M.RRY..E.G.MDF.NFISCLVRLD.MFRAFK.LDRDG.G.....L..WLQLTMYS | |
Retrocopy | LYALMIRRYANEDGTMDFNNFISCLVRLDGMFRAFKALDRDGDGKVQMNLQDWLQLTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 9 .42 RPM | 232 .28 RPM |
SRP009831_brain | 18 .27 RPM | 76 .79 RPM |
SRP009831_dewlap | 25 .86 RPM | 47 .00 RPM |
SRP009831_embryo | 8 .27 RPM | 113 .99 RPM |
SRP009831_heart | 37 .77 RPM | 106 .72 RPM |
SRP009831_liver | 2 .78 RPM | 105 .49 RPM |
SRP009831_lung | 11 .28 RPM | 135 .05 RPM |
SRP009831_ovary | 35 .13 RPM | 43 .97 RPM |
SRP009831_skeletal_muscle | 5 .94 RPM | 99 .80 RPM |