RetrogeneDB ID: | retro_mmul_1567 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:53812473..53813172(+) | ||
Located in intron of: | ENSMMUG00000004478 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSMMUG00000000249 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.53 % |
Parental protein coverage: | 87.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GAGGGGGGGGGGGGGGGGGGTAMRILGGVISAISEAAA-QYNPEPPPPRTHYSNIEANESEEVRQFRRLF |
G...GG..GGGG....GGG.....I.GG....ISEAAA.QY.PEPPP...H..N.EA.ESEEVR.FR..F | |
Retrocopy | GEALGGLFGGGGQRREGGGRNIGGIVGGIVNFISEAAAAQYTPEPPPIQQHFTNVEASESEEVRRFRQQF |
Parental | AQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQ |
.QLAG.DMEV.AT.LMNILNKV...H.DLKTDGF..DTCRS.V.VMDSDTTGKLGFEEFKYLWNNIK.WQ | |
Retrocopy | TQLAGPDMEVGATDLMNILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQ |
Parental | AIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKS |
..YKQ.D.D.SG...SS.L.GA..AAGF.LNE.LY.MI.RRY..E.G.MDF.NFISCLVRLDAMFRAFKS | |
Retrocopy | CVYKQYDRDHSGCLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGDMDFNNFISCLVRLDAMFRAFKS |
Parental | LDKDGTGQIQVNIQEWLQLTMYS |
LD.D..G.IQV.I.EWLQLTMYS | |
Retrocopy | LDRDRDGLIQVSIKEWLQLTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 98 .27 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 270 .59 RPM |
SRP007412_cerebellum | 0 .06 RPM | 54 .76 RPM |
SRP007412_heart | 0 .06 RPM | 88 .98 RPM |
SRP007412_kidney | 0 .00 RPM | 80 .87 RPM |
SRP007412_liver | 0 .00 RPM | 56 .72 RPM |
SRP007412_testis | 0 .08 RPM | 229 .03 RPM |