RetrogeneDB ID: | retro_pvam_737 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_10231:35860..36529(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSPVAG00000012885 | ||
Aliases: | None | ||
Description: | calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481] |
Percent Identity: | 71.81 % |
Parental protein coverage: | 84.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GGGGGGGGGGGGGTAMRILGG-VISAISEAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFSQLAGDD |
GG..GG.G.GGGGTA..ILG..VIS..S.AAAQYN..PPPP.THY..IEANE.E...QF.RLF.QLAGDD | |
Retrocopy | GGRDGGRGSGGGGTALCILGE<VISTVSKAAAQYNLGPPPPCTHYFDIEANENEGLWQFWRLFAQLAGDD |
Parental | TRVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFD |
..VSATEL.N.LNKVVT...DLKTDGFG.DTC.SM.AVMDSD.TG.L.FEEFKYLWN.IKKWQAIYK.F. | |
Retrocopy | MEVSATELVNVLNKVVTQNLDLKTDGFGFDTCHSMGAVMDSDMTGRLSFEEFKYLWNSIKKWQAIYKRFC |
Parental | VDCSGTIGSSELPGAFEAAGFHLNEHLYNMIIRRYADE-EG-NMDFDNFISCLVRLDAMFRAFKSLDRDG |
VD.SGTI.SSE.P.AFEAAGFH.NEHLY.MIIR.Y.D..EG.N.DFDNFISCL.RLD..F..F.SL...G | |
Retrocopy | VDGSGTIDSSEHPRAFEAAGFHVNEHLYDMIIRGYLDK<EG<NTDFDNFISCLFRLDTTFCTFRSLGKCG |
Parental | TGQIQVNIQEWLQLTMY |
TGQIQVNIQE.LQ.... | |
Retrocopy | TGQIQVNIQERLQSAVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |