RetrogeneDB ID: | retro_pabe_1686 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:59930321..59930644(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP1A | ||
Ensembl ID: | ENSPPYG00000010852 | ||
Aliases: | None | ||
Description: | FK506 binding protein 1A, 12kDa [Source:HGNC Symbol;Acc:3711] |
Percent Identity: | 86.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEG-VAQMSV |
MGVQVETISPG...TF....QTCVVHYTGMLEDGKKFDSSRDRNKPF.FMLGKQEVIRGWE.G.VA.MSV | |
Retrocopy | MGVQVETISPGEELTFLRHSQTCVVHYTGMLEDGKKFDSSRDRNKPFNFMLGKQEVIRGWEKG<VA*MSV |
Parental | GQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE |
GQRAKLTISPD..YGATGHPGIIPPHATL.F.VELLKLE | |
Retrocopy | GQRAKLTISPDSPYGATGHPGIIPPHATLIFIVELLKLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 176 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .69 RPM |
SRP007412_heart | 0 .00 RPM | 46 .15 RPM |
SRP007412_kidney | 0 .10 RPM | 83 .66 RPM |
SRP007412_liver | 0 .06 RPM | 80 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008303 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000020908 | 4 retrocopies | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Homo sapiens | ENSG00000088832 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001729 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000015996 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019554 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002629 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004149 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000010852 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000012604 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013163 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007188 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003547 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000011511 | 1 retrocopy |