RetrogeneDB ID: | retro_pabe_2107 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:27264767..27265155(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSPPYG00000007769 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 93.08 % |
Parental protein coverage: | 53.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLS-VAYKNVIGARRASWRIISSIEQK |
MDD.EDLVYQAKLA.QAERYDEMVESMKKVAGMDVELTVEERNLLS..A.KNVI.ARRAS.RIIS..EQK | |
Retrocopy | MDDQEDLVYQAKLAKQAERYDEMVESMKKVAGMDVELTVEERNLLS>IANKNVIEARRASGRIISNVEQK |
Parental | EENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYH |
EENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYH | |
Retrocopy | EENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .49 RPM | 551 .30 RPM |
SRP007412_cerebellum | 0 .24 RPM | 371 .37 RPM |
SRP007412_heart | 0 .84 RPM | 183 .09 RPM |
SRP007412_kidney | 0 .66 RPM | 279 .79 RPM |
SRP007412_liver | 0 .43 RPM | 168 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2324 |
Pan troglodytes | retro_ptro_1697 |