RetrogeneDB ID: | retro_ggor_763 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:132491568..132492074(-) | ||
Located in intron of: | ENSGGOG00000006764 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024925 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSGGOG00000022521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.31 % |
Parental protein coverage: | 99.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDW-PF |
A.MNRPAPVE....NM.FL.THNPTNATLNKF.EELKKYGVTT.VRVC.ATYD...VEK.GIH.LDW..F | |
Retrocopy | AIMNRPAPVEISCENMCFLVTHNPTNATLNKFPEELKKYGVTTLVRVCDATYDKAPVEKGGIHLLDW<AF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEGGMKYEDAVQFIRQKRRG |
DDGAPP.NQIVDDWL.L...KF.EEPG.C.AV.CVAGLG.RAPVLVALALIE.GMKYEDAVQFIRQKRRG | |
Retrocopy | DDGAPPPNQIVDDWLNLL*TKFCEEPGGCVAVPCVAGLG-RAPVLVALALIECGMKYEDAVQFIRQKRRG |
Parental | AFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
AFNSKQLLYLEKY.PKM.LRF.D.NGH...CC.Q | |
Retrocopy | AFNSKQLLYLEKYQPKM*LRFRDTNGH---CCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 4 .99 RPM | 31 .51 RPM |
SRP007412_cerebellum | 3 .11 RPM | 22 .89 RPM |
SRP007412_heart | 2 .81 RPM | 9 .41 RPM |
SRP007412_kidney | 4 .74 RPM | 61 .58 RPM |
SRP007412_liver | 2 .24 RPM | 239 .30 RPM |
SRP007412_testis | 6 .42 RPM | 138 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_944 |
Pan troglodytes | retro_ptro_654 |
Pongo abelii | retro_pabe_808 |
Macaca mulatta | retro_mmul_1132 |