RetrogeneDB ID: | retro_rnor_1655 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:158793376..158793849(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl18a | ||
Ensembl ID: | ENSRNOG00000018795 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/Swiss-Prot;Acc:P62718] |
Percent Identity: | 79.87 % |
Parental protein coverage: | 89.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK |
M..SGTL.EYKVVG.CLPTPK.HT.PLY.M.IF.PNHVVAKS.FWYF.SQLKKMKKSS.EIVY.GQVFEK | |
Retrocopy | MNVSGTLWEYKVVGCCLPTPKYHTLPLYPMQIFVPNHVVAKSCFWYFESQLKKMKKSSREIVYYGQVFEK |
Parental | SPLRVKNFGIWLRYDSRSGTHNMYREY-RDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRR |
SPL.VKNFGIWLRYDS.S.TH..YREY...LTTAGAVT.CY.DM.A.H.A.AHSIQIMKVEE.A.G.CR. | |
Retrocopy | SPLHVKNFGIWLRYDSLSSTHSVYREY<PNLTTAGAVTECYHDMDAGHCAGAHSIQIMKVEETATGECRW |
Parental | PAVKQFHDSKIKFPLPHRV |
PAVKQFH.SKIKFPLPHRV | |
Retrocopy | PAVKQFHVSKIKFPLPHRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 106 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 128 .40 RPM |
SRP017611_liver | 0 .00 RPM | 86 .87 RPM |