RetrogeneDB ID: | retro_mmul_364 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:29835777..29836275(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000028844 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:F6Z534] |
Percent Identity: | 75.44 % |
Parental protein coverage: | 95.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EYKVVGRCLPTPKCH-PPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEI-VYCGQVFEKSPLRVKN |
EYKVVGR.LPTPKCH.PPLYRM.IFAPNHVV..S.FWYF.SQ........G...VYCG.V.EKSPLR.KN | |
Retrocopy | EYKVVGRSLPTPKCHTPPLYRMGIFAPNHVVDRSHFWYFISQ-RR*RSLQGRL<VYCGLVSEKSPLRLKN |
Parental | FGIWLRYDSRS-GTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRP-AVKQF |
FGIWL.YDSR..GTH.MY.EYRDL.TAG.VTQCYRDMGA.H.A..HSIQIMKVEEIAASKC.RP.A.K.F | |
Retrocopy | FGIWLCYDSRA<GTHSMY*EYRDLNTAGTVTQCYRDMGAWHPAWTHSIQIMKVEEIAASKCPRP<ADKKF |
Parental | HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF |
HDSKIKF.LPH.VL..QHKP.FTT.RPNTFF | |
Retrocopy | HDSKIKFLLPHGVLCCQHKPHFTTRRPNTFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 60 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .17 RPM |
SRP007412_heart | 0 .00 RPM | 33 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .81 RPM |
SRP007412_liver | 0 .00 RPM | 78 .06 RPM |
SRP007412_testis | 0 .11 RPM | 29 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_128 |