RetrogeneDB ID: | retro_pabe_1620 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:11712138..11712664(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSPPYG00000009725 | ||
Aliases: | None | ||
Description: | ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] |
Percent Identity: | 85.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK |
MKASGTL.EYKVVGRCLPTPKCHTPPLY.MRIFAP.HVVAKS.FWYFVSQLKKMK.SSGE.V.CGQVFEK | |
Retrocopy | MKASGTLQEYKVVGRCLPTPKCHTPPLYHMRIFAPDHVVAKSHFWYFVSQLKKMK-SSGETVNCGQVFEK |
Parental | SPLRVKNFGIWLRYD-SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRR |
.PL.VKNFGIWLRY..S.SGTHNMY.EYRDLTT.G.VTQCYRDMGAR..A..HSIQIMKVEEIA.SK.RR | |
Retrocopy | YPLQVKNFGIWLRYE>SWSGTHNMYQEYRDLTTTGTVTQCYRDMGARYPAWTHSIQIMKVEEIATSKSRR |
Parental | PAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF |
.A.KQF.DSKIKFPLPHRVLR.QHKPRFTTKRPNTFF | |
Retrocopy | LAIKQFQDSKIKFPLPHRVLRHQHKPRFTTKRPNTFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 83 .71 RPM |
SRP007412_cerebellum | 0 .12 RPM | 50 .95 RPM |
SRP007412_heart | 0 .09 RPM | 66 .02 RPM |
SRP007412_kidney | 0 .10 RPM | 149 .33 RPM |
SRP007412_liver | 0 .06 RPM | 162 .89 RPM |