RetrogeneDB ID: | retro_cpor_1478 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:41792229..41792652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000015205 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:H0VST8] |
Percent Identity: | 65.75 % |
Parental protein coverage: | 81.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | IFAPNHVVA-KSRFWYFVSQLKKMKKS-SGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRD |
IF.PNHV....S.FWYFVSQL.KM.KS.SGEIVYCGQ.F.KS.L.VKNFGIWL..DS...THNMY.E... | |
Retrocopy | IFIPNHVLT<QSQFWYFVSQLRKM-KS<SGEIVYCGQLFDKSSLQVKNFGIWLH*DSHNSTHNMYQEHHE |
Parental | LTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCR-RPAVKQFHDSKIKFPLPHRVLRRQHKPRFT |
LTT..A.TQ.Y.D.G..H.A.AHSI.I..VEEI..SKC...P..KQF.DSKIKFPLP..VL..QHKP..T | |
Retrocopy | LTTVAAITQYYWDGGIQHCAHAHSI*IVRVEEITTSKCH<LPTIKQFRDSKIKFPLPYQVLHCQHKPHVT |
Parental | TKRPNT |
TKR.NT | |
Retrocopy | TKRTNT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 89 .78 RPM |
SRP017611_kidney | 0 .00 RPM | 118 .19 RPM |
SRP017611_liver | 0 .00 RPM | 75 .78 RPM |
SRP040447_lung | 0 .00 RPM | 292 .86 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 347 .83 RPM |