RetrogeneDB ID: | retro_acar_86 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:180594712..180595063(+) | ||
Located in intron of: | ENSACAG00000013683 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSACAG00000003125 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:G1KBJ4] |
Percent Identity: | 93.16 % |
Parental protein coverage: | 66.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIM |
SG.IVYC.QVFEKSPLRVKNFGIWLRYDS.SGTHNMYREYRDLTTAGAVTQCY.DMGA.HRA.A.SIQIM | |
Retrocopy | SGYIVYCVQVFEKSPLRVKNFGIWLRYDSSSGTHNMYREYRDLTTAGAVTQCYHDMGAHHRAHAYSIQIM |
Parental | KVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRCQHKPRFTTKRPNT |
KVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR.QHKPRFTTKRPNT | |
Retrocopy | KVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 1 .21 RPM | 1652 .85 RPM |
SRP009831_brain | 0 .14 RPM | 228 .56 RPM |
SRP009831_dewlap | 0 .13 RPM | 287 .55 RPM |
SRP009831_embryo | 0 .24 RPM | 832 .84 RPM |
SRP009831_heart | 0 .21 RPM | 406 .55 RPM |
SRP009831_liver | 0 .12 RPM | 472 .46 RPM |
SRP009831_lung | 0 .25 RPM | 308 .79 RPM |
SRP009831_ovary | 0 .23 RPM | 177 .71 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 189 .50 RPM |