Parental gene: | RPL18A, ENSPPYG00000009725 |
| Aliases: | None |
| Description: | ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 19:18301129..18304630(+) |
>ENSPPYG00000009725
ATGAAGGCCTCCGGCACACTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACACCGCCCCT
CTACCGCATGCGAATCTTTGCACCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTCGTATCTCAGTTAAAGAAAA
TGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGTCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAATTTCGGGATC
TGGCTGCGCTATGACTCCCGGAGTGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCAC
CCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGGGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCGCGG
CCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGC
CGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG
ATGAAGGCCTCCGGCACACTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACACCGCCCCT
CTACCGCATGCGAATCTTTGCACCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTCGTATCTCAGTTAAAGAAAA
TGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGTCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAATTTCGGGATC
TGGCTGCGCTATGACTCCCGGAGTGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCAC
CCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGGGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCGCGG
CCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGC
CGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 83 .71 RPM |
| SRP007412_cerebellum | 50 .95 RPM |
| SRP007412_heart | 66 .02 RPM |
| SRP007412_kidney | 149 .33 RPM |
| SRP007412_liver | 162 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000003125 | ortholog_one2many | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000010878 | possible_ortholog | 5 retrogenes | |
| Bos taurus | ENSBTAG00000015831 | ortholog_one2one | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000015122 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014006 | ortholog_one2one | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015205 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000015258 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000007518 | possible_ortholog | 6 retrogenes | |
| Homo sapiens | ENSG00000105640 | ortholog_one2one | 11 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002870 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000003228 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000006701 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000028844 | possible_ortholog | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000019167 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015786 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000045128 | ortholog_one2one | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005889 | ortholog_one2one | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031828 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000010686 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000017378 | possible_ortholog | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018795 | ortholog_one2one | 6 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000000406 | ortholog_one2many | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000013889 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007788 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010488 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008977 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_482 | 79.10 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_487 | 81.46 | 85.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1200 | 90.83 | 68.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1319 | 68.97 | 64.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1620 | 85.88 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2239 | 83.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_2302 | 80.45 | 99.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pabe_3680 | 57.71 | 98.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_pabe_3717 | 92.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_pabe_3802 | 80.18 | 61.36 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000009725 retrocopies