RetrogeneDB ID: | retro_btau_145 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:85463045..85463552(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000009783 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSBTAG00000015831 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/Swiss-Prot;Acc:Q3T003] |
Percent Identity: | 90.21 % |
Parental protein coverage: | 81.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK |
MKASGTL.EYKVVGRCLPTPKC.T.PLY.MRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK | |
Retrocopy | MKASGTLQEYKVVGRCLPTPKCRTLPLYCMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK |
Parental | SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRP |
SPLRVKNFGIWL.YDSRSGTHNM.REYRDLTTAGAVTQCYRDMGARHRARAH.IQIMKVEEI.ASK.... | |
Retrocopy | SPLRVKNFGIWLHYDSRSGTHNMDREYRDLTTAGAVTQCYRDMGARHRARAHLIQIMKVEEIIASKFHDS |
Parental | AVK |
..K | |
Retrocopy | KIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 35 .83 RPM |
ERP005899_muscle | 1 .00 RPM | 892 .40 RPM |
SRP017611_brain | 0 .23 RPM | 88 .85 RPM |
SRP017611_kidney | 0 .47 RPM | 180 .60 RPM |
SRP017611_liver | 0 .68 RPM | 133 .73 RPM |
SRP030211_testis | 0 .10 RPM | 85 .01 RPM |