RetrogeneDB ID: | retro_ggor_1215 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 15:65904938..65905260(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSGGOG00000002870 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:G3QK54] |
Percent Identity: | 71.82 % |
Parental protein coverage: | 61.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EKSPLRVKNF-GIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR-AHSIQIMKVEEIAASK |
E..PLR.KN..GI.LRYDSR.GTHN...EY.DLTT.GAVTQCY.D.G..H....AHSI.IMKVEEI..SK | |
Retrocopy | EVPPLRMKNL<GISLRYDSRRGTHNVHGEYQDLTTRGAVTQCYPDRGSPHHVP<AHSI*IMKVEEIVPSK |
Parental | CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF |
C.RP.VKQFHDSK.KFPLPH.VLR.Q.K..FTTKRPNTFF | |
Retrocopy | CHRPTVKQFHDSKNKFPLPHWVLRYQCKWYFTTKRPNTFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 81 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 111 .54 RPM |
SRP007412_heart | 0 .00 RPM | 98 .47 RPM |
SRP007412_kidney | 0 .00 RPM | 133 .54 RPM |
SRP007412_liver | 0 .00 RPM | 154 .63 RPM |
SRP007412_testis | 0 .00 RPM | 101 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1610 |
Pan troglodytes | retro_ptro_1078 |
Macaca mulatta | retro_mmul_2233 |