RetrogeneDB ID: | retro_rnor_1770 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:52274556..52275501(-) | ||
Located in intron of: | ENSRNOG00000000327 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hnrnpa1 | ||
Ensembl ID: | ENSRNOG00000036839 | ||
Aliases: | Hnrnpa1, Hnrpa1, hnRNP A1 | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:RefSeq peptide;Acc:NP_058944] |
Percent Identity: | 77.16 % |
Parental protein coverage: | 99.38 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | KSESPKEPEQLRKLFIGGLSFETT-DESLRS-HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
..ESP.E.EQLRKLF..GLSF.TT.D.S.RS...EQ.GTLTDCVVMRDPNTKRSRGF..VTY.TVEE.DA | |
Retrocopy | RQESPRELEQLRKLFMRGLSFKTT<DKSPRS<PYEQ*GTLTDCVVMRDPNTKRSRGFVLVTY-TVEEADA |
Parental | AMNARPHKVDGRVVEPKRAVS-REDSQRPGAHLTVKKIFVGG-IKEDTEEHHLRDYFEQ-YGKIEVIEIM |
AMNARPHKV.GR.V.PKRAV...EDSQ.PGAHLTVKKI..GG..KEDTEE.H.RDYFEQ..GK....... | |
Retrocopy | AMNARPHKVEGRAVAPKRAVT<MEDSQSPGAHLTVKKISGGGGAKEDTEERHPRDYFEQ>MGKLK*LKL* |
Parental | TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG |
..RG...K.GFAFVTFDDHDSVDKIVIQK.H.VN.HNC.V.KAL.K.EMASASSS.RGR.GSGNF.GG.G | |
Retrocopy | L-RGAVEKWGFAFVTFDDHDSVDKIVIQK*HIVNDHNCDVKKALWKREMASASSSLRGRGGSGNFRGGYG |
Parental | GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG-NNFGGGGSYNDFGNYNNQSSNFGPM |
GGFGG.DNFG.GGNF..RGGFGGS..GGGYGGSGDGYNGF.NDG...FGGGGSYNDFGNYN.QSSNFG.M | |
Retrocopy | GGFGGSDNFG*GGNFNSRGGFGGS-CGGGYGGSGDGYNGFDNDG<QDFGGGGSYNDFGNYNKQSSNFGSM |
Parental | KGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF |
KG.NFGGRSSGP.GG.GQ.FAKPRNQGGYGGSS.SSSYGSGRRF | |
Retrocopy | KGRNFGGRSSGPHGGRGQRFAKPRNQGGYGGSSNSSSYGSGRRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 101 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .92 RPM |
SRP017611_liver | 0 .20 RPM | 37 .12 RPM |