RetrogeneDB ID: | retro_rnor_2945 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:77795727..77796233(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hnrnpa1 | ||
Ensembl ID: | ENSRNOG00000036839 | ||
Aliases: | Hnrnpa1, Hnrpa1, hnRNP A1 | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:RefSeq peptide;Acc:NP_058944] |
Percent Identity: | 67.05 % |
Parental protein coverage: | 53.12 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM-ASASSSQRGRSGSGNFGGG-RGGGFGGNDNFGR |
VTFDD.DSVDKIVIQKYHTV.GH.CE.R...SK.......SS.Q.G.SG.G.F.GG...GGFGGNDNF.. | |
Retrocopy | VTFDDKDSVDKIVIQKYHTVKGHKCEERLSRSKRWL<SASSS-QKG*SGFGKFSGG<PRGGFGGNDNFD* |
Parental | GGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGNNFGGGGSYNDFGNYNNQSSN-FGPMKGGNFGGRSSG |
GGNF...................DGYNGFGNDG.NFGGGGS.NDFGNYN.QSSN....MKGGNFGGRSSG | |
Retrocopy | GGNFXXXXXXXXXXXXXXXXXXXDGYNGFGNDGSNFGGGGS*NDFGNYNIQSSN>LVRMKGGNFGGRSSG |
Parental | PYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF |
PY.GG.QYFAKP.NQG.YGGSSSSSSYGS.R.F | |
Retrocopy | PYDGGCQYFAKP*NQGSYGGSSSSSSYGSDRKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 101 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .92 RPM |
SRP017611_liver | 0 .00 RPM | 37 .12 RPM |