RetrogeneDB ID: | retro_rnor_2777 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:18803593..18803971(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2d3 | ||
Ensembl ID: | ENSRNOG00000013741 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 D3 [Source:RefSeq peptide;Acc:NP_112516] |
Percent Identity: | 75.78 % |
Parental protein coverage: | 87.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL |
QC.AGPVGDDMFHWQATIMG.NDSP.QGG.FFLTIHF.T.YPFKPP....T..IYH.NINSNGSICLDIL | |
Retrocopy | QCFAGPVGDDMFHWQATIMGLNDSPCQGGAFFLTIHFLTHYPFKPPMK--TIKIYHLNINSNGSICLDIL |
Parental | RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM |
RSQ.......SK.LLSICSLL.DPNPDD.LV.E.A.I..TDR.KYNRIS.E.TQKYAM | |
Retrocopy | RSQCLWL*LVSKFLLSICSLLSDPNPDDILVREPAWISETDRGKYNRISQE*TQKYAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 133 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .77 RPM |
SRP017611_liver | 0 .00 RPM | 130 .51 RPM |