RetrogeneDB ID:

retro_pvam_234

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2050:171806..172193(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPVAG00000015438
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pvam_234
CTGAAAGGGATTAATAAGGAACTTAGTGATTTGGCCCATGACCCTCCAGCACAATGTTCTGCAGGTCCAGCTGGGGATGA
TACGTTTCATTGGCAAGCCACAATTACGGGACCTAATGACAGCCCATATCGAGGTGGTGTATTCTTTTTGACAATTCATT
TTCCTACAGACTACTCCTTCAAACCACCTAAGGCTGCATTTACAACAAGAATTTATCATCCAAATATTAATAGTAATGGC
AGCATTTGTCTCGATAGTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACT
GCTATGTGATCCAAACTCAGATGAGCCCCTAGTGCCAGAGATTGCAGACAGAGATAAGTACAACAGA

ORF - retro_pvam_234 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.5 %
Parental protein coverage: 57.59 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLLGGHTELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR
L.G...EL.DLA.DPPAQCSAGP.GDD.FHWQATI.GPNDSPY.GGVFFLTIHFPTDY.FKPPK.AFTTR
RetrocopyLKGINKELSDLAHDPPAQCSAGPAGDDTFHWQATITGPNDSPYRGGVFFLTIHFPTDYSFKPPKAAFTTR
ParentalIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR
IYHPNINSNGSICLD.LRSQWSPALTISKVLLSICSLLCDPN.D.PLVPEIA...K..R
RetrocopyIYHPNINSNGSICLDSLRSQWSPALTISKVLLSICSLLCDPNSDEPLVPEIADRDKYNR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_234 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 41 parental genes, and 170 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000021831 retrocopy
Ailuropoda melanoleuca ENSAMEG000000112166 retrocopies
Bos taurus ENSBTAG000000041616 retrocopies
Canis familiaris ENSCAFG000000310415 retrocopies
Choloepus hoffmanni ENSCHOG000000046492 retrocopies
Ciona intestinalis ENSCING000000187112 retrocopies
Callithrix jacchus ENSCJAG000000154923 retrocopies
Ciona savignyi ENSCSAVG000000061361 retrocopy
Dasypus novemcinctus ENSDNOG0000000932030 retrocopies
Dipodomys ordii ENSDORG000000067622 retrocopies
Equus caballus ENSECAG000000206781 retrocopy
Erinaceus europaeus ENSEEUG000000108201 retrocopy
Erinaceus europaeus ENSEEUG000000146583 retrocopies
Echinops telfairi ENSETEG000000012913 retrocopies
Felis catus ENSFCAG000000249182 retrocopies
Gorilla gorilla ENSGGOG000000013682 retrocopies
Gorilla gorilla ENSGGOG000000108321 retrocopy
Loxodonta africana ENSLAFG000000068782 retrocopies
Macropus eugenii ENSMEUG000000042566 retrocopies
Macaca mulatta ENSMMUG000000206663 retrocopies
Monodelphis domestica ENSMODG000000117832 retrocopies
Mustela putorius furoENSMPUG000000091105 retrocopies
Mus musculus ENSMUSG0000007857811 retrocopies
Mus musculus ENSMUSG000000918963 retrocopies
Ornithorhynchus anatinus ENSOANG000000054151 retrocopy
Oryctolagus cuniculus ENSOCUG0000002944810 retrocopies
Otolemur garnettii ENSOGAG000000128606 retrocopies
Ochotona princeps ENSOPRG000000116959 retrocopies
Pongo abelii ENSPPYG000000149671 retrocopy
Pongo abelii ENSPPYG000000158446 retrocopies
Pan troglodytes ENSPTRG000000173033 retrocopies
Pteropus vampyrus ENSPVAG000000017731 retrocopy
Pteropus vampyrus ENSPVAG000000073942 retrocopies
Pteropus vampyrus ENSPVAG000000135751 retrocopy
Pteropus vampyrus ENSPVAG00000015438 1 retrocopy
retro_pvam_234 ,
Rattus norvegicus ENSRNOG000000137419 retrocopies
Sus scrofa ENSSSCG000000243061 retrocopy
Sus scrofa ENSSSCG000000298224 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000134816 retrocopies
Tupaia belangeri ENSTBEG000000002705 retrocopies
Tarsius syrichta ENSTSYG000000054591 retrocopy



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