Parental gene:

ENSEEUG00000014658

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3559:592..10749(+)


>ENSEEUG00000014658
TTCCACTGGCAAGCTACAATAATGGGTCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCC
AACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACGACAAGAATTTATCATCCAAATATAAACAGTAATGGCAGCA
TTTGTCTTGACATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTTTTGTCCATCTGTTCTCTGTTG
TGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGTACAACAGAAT
AGCTCGGGAATGGACTCAGAAGTATGCGATGTAA

Library Parental gene expression (RPM)
SRP017611_liver 21 .54 RPM
SRP017611_kidney 37 .51 RPM
SRP017611_brain 42 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002183 possible_ortholog 1 retrogene
retro_acar_182,
Ailuropoda melanoleuca ENSAMEG00000011216 possible_ortholog 6 retrogenes
retro_amel_1295, retro_amel_1427, retro_amel_1648, retro_amel_1750, retro_amel_620, retro_amel_995,
Bos taurus ENSBTAG00000004161 possible_ortholog 6 retrogenes
retro_btau_1421, retro_btau_1602, retro_btau_1739, retro_btau_1775, retro_btau_1851, retro_btau_1852,
Canis familiaris ENSCAFG00000031041 possible_ortholog 5 retrogenes
retro_cfam_1191, retro_cfam_1439, retro_cfam_1602, retro_cfam_2034, retro_cfam_785,
Choloepus hoffmanni ENSCHOG00000004649 possible_ortholog 2 retrogenes
retro_chof_2549, retro_chof_439,
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Callithrix jacchus ENSCJAG00000015492 possible_ortholog 3 retrogenes
retro_cjac_512, retro_cjac_657, retro_cjac_791,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Dasypus novemcinctus ENSDNOG00000009320 possible_ortholog 30 retrogenes
retro_dnov_1061, retro_dnov_1125, retro_dnov_113, retro_dnov_114, retro_dnov_1167, retro_dnov_1193, retro_dnov_1198, retro_dnov_1257, retro_dnov_141, retro_dnov_1544, retro_dnov_1752, retro_dnov_1761, retro_dnov_1831, retro_dnov_1862, retro_dnov_1912, retro_dnov_1934, retro_dnov_1995, retro_dnov_2084, retro_dnov_2135, retro_dnov_2289, retro_dnov_2362, retro_dnov_2457, retro_dnov_2622, retro_dnov_436, retro_dnov_574, retro_dnov_750, retro_dnov_795, retro_dnov_83, retro_dnov_889, retro_dnov_917,
Dipodomys ordii ENSDORG00000006762 possible_ortholog 2 retrogenes
retro_dord_172, retro_dord_323,
Equus caballus ENSECAG00000020678 possible_ortholog 1 retrogene
retro_ecab_859,
Erinaceus europaeus ENSEEUG00000010820 within_species_paralog 1 retrogene
retro_eeur_84,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Felis catus ENSFCAG00000024918 possible_ortholog 2 retrogenes
retro_fcat_1106, retro_fcat_785,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Gorilla gorilla ENSGGOG00000010832 possible_ortholog 1 retrogene
retro_ggor_953,
Loxodonta africana ENSLAFG00000006878 possible_ortholog 2 retrogenes
retro_lafr_288, retro_lafr_290,
Macropus eugenii ENSMEUG00000004256 possible_ortholog 6 retrogenes
retro_meug_1034, retro_meug_1503, retro_meug_2138, retro_meug_564, retro_meug_787, retro_meug_89,
Macaca mulatta ENSMMUG00000020666 possible_ortholog 3 retrogenes
retro_mmul_1298, retro_mmul_2143, retro_mmul_2246,
Monodelphis domestica ENSMODG00000011783 possible_ortholog 2 retrogenes
retro_mdom_17, retro_mdom_884,
Mustela putorius furo ENSMPUG00000009110 possible_ortholog 5 retrogenes
retro_mputfur_1263, retro_mputfur_1637, retro_mputfur_263, retro_mputfur_682, retro_mputfur_703,
Mus musculus ENSMUSG00000078578 possible_ortholog 11 retrogenes
retro_mmus_1818, retro_mmus_1895, retro_mmus_1913, retro_mmus_2293, retro_mmus_2635, retro_mmus_2643, retro_mmus_3119, retro_mmus_3636, retro_mmus_850, retro_mmus_875, retro_mmus_923,
Mus musculus ENSMUSG00000091896 possible_ortholog 3 retrogenes
retro_mmus_2267, retro_mmus_27, retro_mmus_629,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Oryctolagus cuniculus ENSOCUG00000029448 possible_ortholog 10 retrogenes
retro_ocun_1220, retro_ocun_1426, retro_ocun_1536, retro_ocun_1660, retro_ocun_1856, retro_ocun_1941, retro_ocun_261, retro_ocun_467, retro_ocun_887, retro_ocun_988,
Otolemur garnettii ENSOGAG00000012860 possible_ortholog 6 retrogenes
retro_ogar_1124, retro_ogar_3047, retro_ogar_3048, retro_ogar_3110, retro_ogar_544, retro_ogar_599,
Ochotona princeps ENSOPRG00000011695 possible_ortholog 9 retrogenes
retro_opri_1042, retro_opri_1189, retro_opri_206, retro_opri_310, retro_opri_447, retro_opri_457, retro_opri_627, retro_opri_77, retro_opri_838,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pongo abelii ENSPPYG00000015844 possible_ortholog 6 retrogenes
retro_pabe_1016, retro_pabe_1164, retro_pabe_1257, retro_pabe_2330, retro_pabe_30, retro_pabe_3670,
Pan troglodytes ENSPTRG00000017303 possible_ortholog 3 retrogenes
retro_ptro_26, retro_ptro_3141, retro_ptro_341,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Rattus norvegicus ENSRNOG00000013741 possible_ortholog 9 retrogenes
retro_rnor_2777, retro_rnor_342, retro_rnor_345, retro_rnor_539, retro_rnor_650, retro_rnor_724, retro_rnor_725, retro_rnor_772, retro_rnor_784,
Sus scrofa ENSSSCG00000024306 possible_ortholog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 possible_ortholog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Ictidomys tridecemlineatus ENSSTOG00000013481 possible_ortholog 6 retrogenes
retro_itri_1222, retro_itri_1474, retro_itri_1628, retro_itri_463, retro_itri_672, retro_itri_998,
Tarsius syrichta ENSTSYG00000005459 possible_ortholog 1 retrogene
retro_tsyr_1421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_263 51.00 84.62
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2. retro_eeur_566 56.38 77.78
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3. retro_eeur_591 78.22 85.47
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Download FASTA sequences of all ENSEEUG00000014658 retrocopies