Parental gene:

Ube2e1, ENSRNOG00000008794

Aliases:None
Description:ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411]
Organism:Rat (Rattus norvegicus)
Coordinates:15:12188505..12240285(+)


>ENSRNOG00000008794
ATGAGCAAAAACTCGAAGCTCCTCTCCACCAGTGCCAAGAGGATCCAGAAGGAGCTGGCAGACATCACTTTAGACCCGCC
GCCAAACTGCAGTGCTGGTCCCAAAGGTGACAACATCTATGAGTGGAGATCAACCATTCTGGGGCCTCCAGGGTCTGTGT
ATGAAGGTGGAGTCTTCTTCCTCGACATCACTTTTACACCAGAGTATCCCTTCAAGCCTCCAAAGGTTACGTTTCGTACA
AGAATTTATCACTGTAATATTAATAGCCAAGGAGTTATCTGCTTGGACATATTGAAAGACAACTGGAGCCCAGCACTAAC
CATCTCGAAAGTCCTCCTCTCTATCTGCTCACTCCTTACAGACTGCAATCCTGCCGACCCTTTGGTGGGAAGCATTGCCA
CTCAGTATATGACCAACAGAGCAGAGCACGACAGAATGGCCAGACAGTGGACCAAGAGATACGCTACATAA

Library Parental gene expression (RPM)
SRP017611_liver 15 .73 RPM
SRP017611_kidney 37 .05 RPM
SRP017611_brain 49 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003515 ortholog_one2one 2 retrogenes
retro_amel_1117, retro_amel_483,
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Cavia porcellus ENSCPOG00000002251 ortholog_one2many 2 retrogenes
retro_cpor_1036, retro_cpor_52,
Dipodomys ordii ENSDORG00000015441 ortholog_one2one 1 retrogene
retro_dord_785,
Felis catus ENSFCAG00000024719 ortholog_one2one 1 retrogene
retro_fcat_623,
Gorilla gorilla ENSGGOG00000008393 ortholog_one2one 1 retrogene
retro_ggor_76,
Loxodonta africana ENSLAFG00000004150 ortholog_one2one 1 retrogene
retro_lafr_320,
Macropus eugenii ENSMEUG00000014517 ortholog_one2one 1 retrogene
retro_meug_2089,
Mus musculus ENSMUSG00000021774 ortholog_one2one 3 retrogenes
retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Oryctolagus cuniculus ENSOCUG00000006026 ortholog_one2one 2 retrogenes
retro_ocun_134, retro_ocun_243,
Otolemur garnettii ENSOGAG00000007527 ortholog_one2one 3 retrogenes
retro_ogar_2029, retro_ogar_2566, retro_ogar_626,
Pan troglodytes ENSPTRG00000014693 ortholog_one2one 1 retrogene
retro_ptro_68,
Pteropus vampyrus ENSPVAG00000001773 ortholog_one2one 1 retrogene
retro_pvam_1451,
Rattus norvegicus ENSRNOG00000001862 other_paralog 4 retrogenes
retro_rnor_1602, retro_rnor_2633, retro_rnor_2799, retro_rnor_526,
Rattus norvegicus ENSRNOG00000004544 within_species_paralog 1 retrogene
retro_rnor_1236,
Rattus norvegicus ENSRNOG00000013741 other_paralog 9 retrogenes
retro_rnor_2777, retro_rnor_342, retro_rnor_345, retro_rnor_539, retro_rnor_650, retro_rnor_724, retro_rnor_725, retro_rnor_772, retro_rnor_784,
Sarcophilus harrisii ENSSHAG00000001416 ortholog_one2one 1 retrogene
retro_shar_712,
Ictidomys tridecemlineatus ENSSTOG00000025799 ortholog_one2one 2 retrogenes
retro_itri_1371, retro_itri_645,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1632 74.80 77.56
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2. retro_rnor_2291 77.48 96.15
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3. retro_rnor_2343 68.21 96.15
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Download FASTA sequences of all ENSRNOG00000008794 retrocopies