Parental gene:

ENSSTOG00000013481

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393341.1:8668854..8684742(+)


>ENSSTOG00000013481
ATGATCCTTAAGAGCTTCAACAGTAAGGAATTAAATGACCTGGCAAGGGACCCTCCAGCACAGTGTTCTGCAGGTCCTGT
TGGAGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGA
CAATTCATTTCCCAACAGATTATCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAAC
AGTAATGGCAGCATTTGTCTCGATATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCAT
CTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAA
AGTACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004161 possible_ortholog 6 retrogenes
retro_btau_1421, retro_btau_1602, retro_btau_1739, retro_btau_1775, retro_btau_1851, retro_btau_1852,
Canis familiaris ENSCAFG00000031041 possible_ortholog 5 retrogenes
retro_cfam_1191, retro_cfam_1439, retro_cfam_1602, retro_cfam_2034, retro_cfam_785,
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Callithrix jacchus ENSCJAG00000015492 possible_ortholog 3 retrogenes
retro_cjac_512, retro_cjac_657, retro_cjac_791,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Equus caballus ENSECAG00000020678 possible_ortholog 1 retrogene
retro_ecab_859,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 ortholog_one2one 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Felis catus ENSFCAG00000024918 possible_ortholog 2 retrogenes
retro_fcat_1106, retro_fcat_785,
Gorilla gorilla ENSGGOG00000001368 ortholog_one2one 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Gorilla gorilla ENSGGOG00000010832 possible_ortholog 1 retrogene
retro_ggor_953,
Loxodonta africana ENSLAFG00000006878 possible_ortholog 2 retrogenes
retro_lafr_288, retro_lafr_290,
Macaca mulatta ENSMMUG00000020666 possible_ortholog 3 retrogenes
retro_mmul_1298, retro_mmul_2143, retro_mmul_2246,
Monodelphis domestica ENSMODG00000011783 possible_ortholog 2 retrogenes
retro_mdom_17, retro_mdom_884,
Mus musculus ENSMUSG00000078578 possible_ortholog 11 retrogenes
retro_mmus_1818, retro_mmus_1895, retro_mmus_1913, retro_mmus_2293, retro_mmus_2635, retro_mmus_2643, retro_mmus_3119, retro_mmus_3636, retro_mmus_850, retro_mmus_875, retro_mmus_923,
Mus musculus ENSMUSG00000091896 possible_ortholog 3 retrogenes
retro_mmus_2267, retro_mmus_27, retro_mmus_629,
Ornithorhynchus anatinus ENSOANG00000005415 ortholog_one2one 1 retrogene
retro_oana_51,
Ochotona princeps ENSOPRG00000011695 possible_ortholog 9 retrogenes
retro_opri_1042, retro_opri_1189, retro_opri_206, retro_opri_310, retro_opri_447, retro_opri_457, retro_opri_627, retro_opri_77, retro_opri_838,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pongo abelii ENSPPYG00000015844 possible_ortholog 6 retrogenes
retro_pabe_1016, retro_pabe_1164, retro_pabe_1257, retro_pabe_2330, retro_pabe_30, retro_pabe_3670,
Pan troglodytes ENSPTRG00000017303 possible_ortholog 3 retrogenes
retro_ptro_26, retro_ptro_3141, retro_ptro_341,
Pteropus vampyrus ENSPVAG00000015438 ortholog_one2one 1 retrogene
retro_pvam_234,
Rattus norvegicus ENSRNOG00000013741 possible_ortholog 9 retrogenes
retro_rnor_2777, retro_rnor_342, retro_rnor_345, retro_rnor_539, retro_rnor_650, retro_rnor_724, retro_rnor_725, retro_rnor_772, retro_rnor_784,
Sus scrofa ENSSSCG00000024306 possible_ortholog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 possible_ortholog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Ictidomys tridecemlineatus ENSSTOG00000016293 within_species_paralog 2 retrogenes
retro_itri_1528, retro_itri_655,
Ictidomys tridecemlineatus ENSSTOG00000025799 other_paralog 2 retrogenes
retro_itri_1371, retro_itri_645,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,
Tarsius syrichta ENSTSYG00000005459 possible_ortholog 1 retrogene
retro_tsyr_1421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_463 70.51 52.70
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2. retro_itri_672 56.19 68.92
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3. retro_itri_998 58.54 79.73
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4. retro_itri_1222 87.79 88.51
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5. retro_itri_1474 77.45 67.57
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6. retro_itri_1628 85.15 68.24
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Download FASTA sequences of all ENSSTOG00000013481 retrocopies