RetrogeneDB ID: | retro_sara_113 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3414:93997..94324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSSARG00000009319 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 70.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | TESTVITGVDIVMNHHLQETSFTKEAYKKYIRDYMKS-IKGKLEEQRPERVKPFMTGAAEQIKHILANFK |
T.ST.ITGVDI..NHHLQETSFTKEA.KKYI.DYMKS..K..L............TG..EQIKHI.ANFK | |
Retrocopy | TTSTMITGVDIILNHHLQETSFTKEACKKYIKDYMKS>LKANLKNKDQKDLN-LITGTTEQIKHIHANFK |
Parental | NYQFFIGENMNPDGMVALL-DYREDGVTPYMIFFKDGLEMEK |
NYQFFIGEN..PDGM.ALL..Y.EDGVTPYMIFFKD.LEMEK | |
Retrocopy | NYQFFIGENTTPDGMAALL<GYHEDGVTPYMIFFKDSLEMEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |