RetrogeneDB ID: | retro_tsyr_1549 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_485954:19..438(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSTSYG00000003160 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 66.43 % |
Parental protein coverage: | 88.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | VSRTEGNIDDSLIGGNASAEGPEGEGTE--STVVTGVD-IVMNHHLQETSFTKEAYKKYIKDYMKSIKGK |
VS.T...IDDSLI.GNAS.E.PE..G....S...T.VD.IV.NHH.QET.F..E..KK.IKDY.KSIKGK | |
Retrocopy | VS*TVDDIDDSLIDGNASTEDPENSGPDIKSIAITSVD>IVINHHFQETNFSSETSKKHIKDYIKSIKGK |
Parental | LEEQRPERVKPFMTGAAE-QIKHILANFK-NYQFFIGENMNPDGMVALLDYREDGV-TPYMIFFKDGLEM |
L.EQR.ERVKPF..GAA...IKHIL..FK.NYQFF.GEN.NP..MV.LLD..ED.V..PYMIFFK.GLEM | |
Retrocopy | LKEQRLERVKPFIEGAADKKIKHILIYFK<NYQFFTGENINPYNMVVLLDNCEDAV<DPYMIFFKNGLEM |
Parental | EKC |
EKC | |
Retrocopy | EKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |