RetrogeneDB ID: | retro_tsyr_1054 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_289197:1341..1761(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSTSYG00000003160 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022] |
Percent Identity: | 66.9 % |
Parental protein coverage: | 88.39 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VSRTEGNIDDSLIGGNASAEGPE--GEGTESTVVTGVD-IVMNHHLQETSFTKEAYKKYIKDYMKSIKGK |
VS.T.GNIDDSLI.GNAS.E..E..G....S...T.VD.IV.NHH.QET.F..E..KKYIKDY.KS.KGK | |
Retrocopy | VS*TVGNIDDSLIDGNASIEDSEN*GPDIKSIAITSVD>IVINHHFQETNFSSETNKKYIKDYIKSVKGK |
Parental | LEEQRPERVKPFMTGAAE-QIKHILANFKNYQFFIGENMNPDGMVALLDYREDGV-TPYMIFFKDGLEME |
L.E.R.ERVKPFM.G.A...IKHI...FKNYQFF.GEN.NPD.MV.LLD..EDGV..PYMIFFK.G.EME | |
Retrocopy | LKEWRLERVKPFMEGTADKKIKHIFVYFKNYQFFTGENINPDNMVILLDNCEDGV<DPYMIFFKNG*EME |
Parental | KC |
KC | |
Retrocopy | KC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |