RetrogeneDB ID: | retro_sscr_1157 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | X:61516233..61516723(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSSSCG00000028485 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 66.46 % |
Parental protein coverage: | 50.31 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | NHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPP |
NHYR.YP..RGPP.N.QQN..NSESGEKN.GSE.AP....Q...PY.R.R.PPYYM.RPYG..P.YSNPP | |
Retrocopy | NHYRFYPHHRGPPCNFQQNNLNSESGEKNKGSEGAPKCHTQ*H*PYHRQRLPPYYMQRPYGQ*P*YSNPP |
Parental | VQGEVMEGADNQGAGEQGRPVRQNVYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQR-RY |
VQ.EVM.G..NQGAGEQGRPV....Y.GYRP.F.RGPP.QRQ...DGN.EDKENQGDE.QGQQ.....RY | |
Retrocopy | VQEEVMQGVYNQGAGEQGRPVKESMYQGYRP*FHRGPPHQRQLKQDGNQEDKENQGDESQGQQQLKL>RY |
Parental | RRNFNYRRRRPENPKPQDGKETKA |
R.NFNY....PE..KPQDGKE... | |
Retrocopy | RHNFNYQCSHPEISKPQDGKESES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 380 .94 RPM |
SRP014902_testis | 0 .00 RPM | 472 .15 RPM |
SRP018288_heart | 0 .00 RPM | 1122 .29 RPM |
SRP018288_kidney | 0 .00 RPM | 348 .32 RPM |
SRP018288_liver | 0 .00 RPM | 320 .30 RPM |
SRP018288_lung | 0 .00 RPM | 573 .38 RPM |
SRP018856_adipose | 0 .00 RPM | 1214 .00 RPM |
SRP035408_brain | 0 .00 RPM | 705 .69 RPM |
SRP035408_liver | 0 .00 RPM | 895 .64 RPM |