RetrogeneDB ID: | retro_sscr_889 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:130801206..130801579(-) | ||
Located in intron of: | ENSSSCG00000025085 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000011676 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.57 % |
Parental protein coverage: | 51.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKNLTDCTD |
MLQTLN.EVPKYRDQISSPGL..F.K........F.VSDP.SYKGYIDDLKKFLKPYDLEEQKNLTDC.. | |
Retrocopy | MLQTLNHEVPKYRDQISSPGLNGFSKTSVSVGL-FVVSDPESYKGYIDDLKKFLKPYDLEEQKNLTDCPY |
Parental | GKFL-EQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQG |
G.F..EQKGP.YDACRF...LLE.CS..IDPQFGYSRGNPCILVKMNR.IGLKPQG | |
Retrocopy | GTFF>EQKGPDYDACRFLPHLLETCSVVIDPQFGYSRGNPCILVKMNRVIGLKPQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 4 .65 RPM |
SRP014902_testis | 0 .00 RPM | 31 .12 RPM |
SRP018288_heart | 0 .00 RPM | 13 .78 RPM |
SRP018288_kidney | 0 .00 RPM | 26 .30 RPM |
SRP018288_liver | 0 .16 RPM | 5 .44 RPM |
SRP018288_lung | 0 .00 RPM | 29 .22 RPM |
SRP018856_adipose | 0 .00 RPM | 16 .85 RPM |
SRP035408_brain | 0 .00 RPM | 29 .82 RPM |
SRP035408_liver | 0 .00 RPM | 5 .61 RPM |