RetrogeneDB ID: | retro_ttru_333 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1895:97215..97919(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP1B3 | ||
Ensembl ID: | ENSTTRG00000012038 | ||
Aliases: | None | ||
Description: | ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806] |
Percent Identity: | 85.17 % |
Parental protein coverage: | 84.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | FYGFLAALFTFTMWAMLQTLNDEVPK-YRDQIPSPGLMVFPKPVTALDFSFSVSNPESYRGYINDLKKFL |
FYGFLAALFTFT.WAMLQ.LNDEVPK..RDQ.PSPGL.VFPKPVTALDFSF.VSNPESYRG.INDLKKFL | |
Retrocopy | FYGFLAALFTFTKWAMLQALNDEVPK>NRDQMPSPGLTVFPKPVTALDFSFIVSNPESYRGCINDLKKFL |
Parental | KPYGLEEQKNLTDCPSGALS-EKKGPEYTSCQFPLVLLEACSGVDDPEFGYSTGRPCILVKMNRIIGLKP |
K.YGLEEQKNLTDCP.GA...E.KG..YTSC.FPLVLLEA.SGVDDPEFGYST..PCILVKMNRIIGLK. | |
Retrocopy | KSYGLEEQKNLTDCPDGAFF>EQKGLDYTSCRFPLVLLEARSGVDDPEFGYSTESPCILVKMNRIIGLKT |
Parental | QGEPRIECI-KGENTALLSTYPSNGMIDLKYFPYYGKKLHGSYLQPLVAVQLTFDNRNDINEVTVECKID |
QGEPRIECI.KGENT..LSTY.SNG.IDLKYFPYYGKKLHGSYLQ..VAVQL.F.NRN..NEVTVE.KID | |
Retrocopy | QGEPRIECILKGENTSVLSTYASNGTIDLKYFPYYGKKLHGSYLQSFVAVQLIFGNRNNVNEVTVERKID |
Parental | GSPNLKNQDDRDKFLGRVVFKITMRP |
GSPNLKNQ.DRDKFLGRV.FKITMRP | |
Retrocopy | GSPNLKNQEDRDKFLGRVAFKITMRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014140 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007515 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000001981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003739 | 4 retrocopies | |
Equus caballus | ENSECAG00000019885 | 2 retrocopies | |
Homo sapiens | ENSG00000069849 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010553 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032412 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004663 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008662 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000013927 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014169 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015476 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011501 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000011676 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013235 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001004 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000222 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012038 | 1 retrocopy |
retro_ttru_333 ,
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