Parental gene:

ATP1B3, ENSECAG00000019885

Aliases:None
Description:ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806]
Organism:Horse (Equus caballus)
Coordinates:16:75972036..75992094(+)


>ENSECAG00000019885
GGTTTGATCTTGCTCTTCTACCTAGTCTTTTATGGCTTCCTGGCTGCACTCTTCTCGTTCACAATGTGGGCTATGCTTCA
GACTCTGAACGATGAAGTTCCAAAATACCGTGACCAGATTCCTAGTCCAGGGCTTATGGTTTTTCCGAAACCAGTGACTG
CGTTGGACTATTCATTCCGTGTGTCTGATCCAGAGTCCTATAGAGGATACGTAGACGATCTCACCAAATTTCTAAAGTCA
TACGATTTAGAAGAACAGAAGAATCTCACAGCCTGTCCCGATGGAGCCCTTCGTGAACAGAAGGGGCCGACTTATACTGC
GTGCCAGTTTCCTGTCGTTTCCCTTAAAGGATGCAGTGGTGTGGAGGACCCCGAGTTTGGCTACTCCACAGGAAACCCTT
GTATTCTTGTGAAAATGAACAGGATAATTGGATTAAAACCTCAAGGAAAACCGAGGATAAATTGTATTTCGAAGGGTGAA
AAGACAGCCACTCTATCAACTTATCCATCTAATGGAACTATAGACTTAAAATATTTTCCATATTATGGGAAAAAACTGCA
TGTGAGGTATCTCCAGCCATTAGTTGCTGTCCAGGTGGCCTTTAATACTACCAGTACTGGAAAAGAAGTAACAGTCGAGT
GCAAGATTGATGGATCACCCAATCTAAGAAACCAGGATGATCGTGACAAGTTTTTAGGACGAGTTGTTTTCAAAATCACA
ATGCATGCATAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 54 .05 RPM
SRP021940_embryo 41 .27 RPM
SRP021940_cerebellum 59 .98 RPM
SRP021940_testis 58 .89 RPM
SRP021940_placental_villous 54 .13 RPM
SRP021940_articular_cartilage 30 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014140 ortholog_one2one 5 retrogenes
retro_btau_1136, retro_btau_1322, retro_btau_1743, retro_btau_318, retro_btau_920,
Choloepus hoffmanni ENSCHOG00000007515 ortholog_one2one 4 retrogenes
retro_chof_1000, retro_chof_1421, retro_chof_2393, retro_chof_2445,
Callithrix jacchus ENSCJAG00000001981 ortholog_one2many 1 retrogene
retro_cjac_309,
Cavia porcellus ENSCPOG00000003739 ortholog_one2many 4 retrogenes
retro_cpor_1181, retro_cpor_1468, retro_cpor_1506, retro_cpor_222,
Homo sapiens ENSG00000069849 ortholog_one2one 2 retrogenes
retro_hsap_1387, retro_hsap_2263,
Loxodonta africana ENSLAFG00000010553 ortholog_one2one 1 retrogene
retro_lafr_815,
Mus musculus ENSMUSG00000032412 ortholog_one2one 2 retrogenes
retro_mmus_2174, retro_mmus_3427,
Nomascus leucogenys ENSNLEG00000004663 ortholog_one2one 1 retrogene
retro_nleu_1286,
Otolemur garnettii ENSOGAG00000008662 ortholog_one2one 1 retrogene
retro_ogar_2284,
Procavia capensis ENSPCAG00000013927 ortholog_one2one 1 retrogene
retro_pcap_350,
Pongo abelii ENSPPYG00000014169 ortholog_one2one 1 retrogene
retro_pabe_1953,
Pan troglodytes ENSPTRG00000015476 ortholog_one2one 2 retrogenes
retro_ptro_1603, retro_ptro_951,
Rattus norvegicus ENSRNOG00000011501 ortholog_one2one 2 retrogenes
retro_rnor_2571, retro_rnor_789,
Sus scrofa ENSSSCG00000011676 ortholog_one2many 3 retrogenes
retro_sscr_889, retro_sscr_945, retro_sscr_95,
Ictidomys tridecemlineatus ENSSTOG00000013235 ortholog_one2one 1 retrogene
retro_itri_1663,
Tupaia belangeri ENSTBEG00000001004 ortholog_one2many 1 retrogene
retro_tbel_3620,
Tarsius syrichta ENSTSYG00000000222 ortholog_one2one 1 retrogene
retro_tsyr_330,
Tursiops truncatus ENSTTRG00000012038 ortholog_one2one 1 retrogene
retro_ttru_333,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_468 60.36 68.31
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2. retro_ecab_1084 76.98 51.03
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Download FASTA sequences of all ENSECAG00000019885 retrocopies