RetrogeneDB ID: | retro_sscr_95 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:16491107..16491908(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000014896 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000011676 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.4 % |
Parental protein coverage: | 95.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LILLFYLVFYVFLAALFAFTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYI |
LILLFYLVFYVFLAALFAFTMWVMLQ.LNDEVPKYRDQISS.GL.VFPKPVSALDYSFSVSDPDSYKGYI | |
Retrocopy | LILLFYLVFYVFLAALFAFTMWVMLQILNDEVPKYRDQISSSGLTVFPKPVSALDYSFSVSDPDSYKGYI |
Parental | DDLKKFLKPYDLEEQKNLTDCTDGKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNR |
DDLKKFLKP...EEQKNLTDCTDG.FLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNP.ILVKMNR | |
Retrocopy | DDLKKFLKP---EEQKNLTDCTDGEFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPGILVKMNR |
Parental | IIGLKPQGEPRIECISKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVT |
IIGLKPQGEPRIECISKGESTAVLSTYPPNGKID.KYFPYYGKKLH.NYLQPL.A.QLTFDAGNDMNEVT | |
Retrocopy | IIGLKPQGEPRIECISKGESTAVLSTYPPNGKIDVKYFPYYGKKLHRNYLQPLLALQLTFDAGNDMNEVT |
Parental | VECKIDGSPNLKNQDDRDKFLG |
VEC.IDGSPNLKNQDDRDKFLG | |
Retrocopy | VECEIDGSPNLKNQDDRDKFLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 4 .65 RPM |
SRP014902_testis | 2 .69 RPM | 31 .12 RPM |
SRP018288_heart | 0 .47 RPM | 13 .78 RPM |
SRP018288_kidney | 1 .18 RPM | 26 .30 RPM |
SRP018288_liver | 0 .16 RPM | 5 .44 RPM |
SRP018288_lung | 0 .51 RPM | 29 .22 RPM |
SRP018856_adipose | 0 .18 RPM | 16 .85 RPM |
SRP035408_brain | 0 .41 RPM | 29 .82 RPM |
SRP035408_liver | 0 .18 RPM | 5 .61 RPM |