RetrogeneDB ID: | retro_hsap_1387 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:20376335..20376804(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259016 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP1B3 | ||
Ensembl ID: | ENSG00000069849 | ||
Aliases: | ATP1B3, ATPB-3, CD298 | ||
Description: | ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806] |
Percent Identity: | 54.94 % |
Parental protein coverage: | 57.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GLILLFYLVFYGFLAALFSFTMWVMLQTLNDEVPKYRDQIPSPGLMVFPKPVTALEYTFSRSDPTSYAGY |
GL.LLFYLVF.GFLAALF.FTMW.MLQ.L.D.VPK...Q.PS.GL...P..V.AL.Y.FS.SD..S...Y | |
Retrocopy | GLLLLFYLVFCGFLAALFLFTMWTMLQVLKDRVPK--QQLPSSGLKISPESVMALKYVFSMSDSAS*NRY |
Parental | IEDLKK-FLKPYTLEEQKNLTVCPDGALFEQ-KGPVYVACQFPISLLQACSGMNDPDFGYSQGNPCILVK |
..D....F.K...L.E.KNLT..PD..LFE..KG.VY.AC.FP..LL.ACSGM.DPD.....GN..ILVK | |
Retrocopy | FVDFNN<FSKA-VLDEEKNLTIHPDEVLFER<KGLVYNACKFPATLL*ACSGMEDPDICGFKGNHFILVK |
Parental | MNRIIGLKPEGVPRIDCVSKNE |
..R.I.L.P...PR.....K.. | |
Retrocopy | ISRVIRLNPQVEPRLMGLKKHK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 82 .71 RPM |
bodymap2_adrenal | 0 .00 RPM | 110 .17 RPM |
bodymap2_brain | 0 .00 RPM | 69 .69 RPM |
bodymap2_breast | 0 .00 RPM | 77 .14 RPM |
bodymap2_colon | 0 .00 RPM | 103 .74 RPM |
bodymap2_heart | 0 .00 RPM | 47 .92 RPM |
bodymap2_kidney | 0 .00 RPM | 139 .24 RPM |
bodymap2_liver | 0 .00 RPM | 12 .23 RPM |
bodymap2_lung | 0 .00 RPM | 280 .10 RPM |
bodymap2_lymph_node | 0 .00 RPM | 176 .10 RPM |
bodymap2_ovary | 0 .00 RPM | 97 .10 RPM |
bodymap2_prostate | 0 .00 RPM | 68 .26 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .62 RPM |
bodymap2_testis | 0 .00 RPM | 135 .44 RPM |
bodymap2_thyroid | 0 .00 RPM | 115 .10 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 91 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_951 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014140 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007515 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000001981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003739 | 4 retrocopies | |
Equus caballus | ENSECAG00000019885 | 2 retrocopies | |
Homo sapiens | ENSG00000069849 | 2 retrocopies |
retro_hsap_1387 , retro_hsap_2263,
|
Homo sapiens | ENSG00000143153 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010553 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032412 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008662 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000013927 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015476 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011501 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000011676 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013235 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001004 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000222 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012038 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |