RetrogeneDB ID: | retro_tbel_3555 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_14460:22468..23289(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000015946 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.02 % |
Parental protein coverage: | 92.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIEN |
MS..LDVLQM.E.DVLKF.AAGT.LGGTNLDFQMEQ.IY...SDGI.II.L..TWEKLLLAA.A.VAI.N | |
Retrocopy | MSRVLDVLQMWEDDVLKFVAAGTYLGGTNLDFQMEQDIYNMESDGICIISLNKTWEKLLLAACATVAIKN |
Parental | PADVSVISSRNTGXRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYV |
.A..SV.SSRNTG.RA.LKFAA.TGAT..AG.FTPGTFTN.IQ.AF.EP.LLV.TDPR.D.QPLTEASYV | |
Retrocopy | LANISVVSSRNTGQRAMLKFAATTGATHLAGCFTPGTFTNHIQTAF*EPHLLVITDPRTDYQPLTEASYV |
Parental | NLPTIALCNTDSPLRYVDIAIPCNNKVAGSLGLTWWMLAREVLRMRGT-ISREHPWEVMPDLYFYRDPEE |
NLPTIA.CNTDSPL..V.IAI.CNNK...S.G..W.MLAREVL.MRGT.IS.E.PW.VMPDLYF...PEE | |
Retrocopy | NLPTIAPCNTDSPLCCVGIAILCNNKEVCSVGVMW*MLAREVLHMRGT<ISCEQPWKVMPDLYFCISPEE |
Parental | I-EKEEQAAAEKAVTKEEFQGEWAAPAPEFTATQPEVADWSEGRQVPSVPIQ-QFPTG-DWSAQPATE |
I.EKEE.AAAEK.V.KEEFQGEW.APAPE.TATQPEVADW.E...V.SVP...QFPT..DW.A.P... | |
Retrocopy | I>EKEELAAAEK-VAKEEFQGEWTAPAPEYTATQPEVADWLESLKVSSVPTY<QFPTAEDWPAAPTAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |