RetrogeneDB ID: | retro_tbel_976 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3481:178438..179252(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSTBEG00000006274 | ||
Aliases: | None | ||
Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
Percent Identity: | 84.48 % |
Parental protein coverage: | 51.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | LVRLLHHDDPEVLADTCWAISYLTDGPNERIEMVVKTGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD |
LV.LLHHDDPEV..D.CW..SYL...PNERIEMVVKTG.VPQLVKLLGAT.LPIVTPALRA.GNIVTGTD | |
Retrocopy | LVHLLHHDDPEVSPDSCWVTSYLSHSPNERIEMVVKTGAVPQLVKLLGATKLPIVTPALRAVGNIVTGTD |
Parental | EQTQVVIDAGALAVFPSLLTNSKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP-FLVGVLSKADFKTQ |
EQTQ.VIDAGA.AV.PSLLTNSKTNIQKEA.WTMSNIT.GRQDQIQQV.N.GLVP.FL..VLSKADFK.Q | |
Retrocopy | EQTQIVIDAGAPAVSPSLLTNSKTNIQKEAPWTMSNIT-GRQDQIQQVANPGLVP>FLIRVLSKADFKMQ |
Parental | KEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMI |
KEAVWAVTN.TSG.TVEQIVYL.HCGIIEPLMNL.TAKDTKIILVILDAISNIFQAAEK..E..KLSIMI | |
Retrocopy | KEAVWAVTNSTSGRTVEQIVYLIHCGIIEPLMNLPTAKDTKIILVILDAISNIFQAAEKREEMKKLSIMI |
Parental | EECGGLDKIEALQNHENESVYKSSLNLIEKYFSVEEEE-DQNVVPETTSDSYTFQV-QDG-TPGAFN |
EECG.LDKIEA.QNHE.ESVYK.SLNLIEK.FSVEEEE.DQ..VP.TTSDSYTFQV..DG.TPGAFN | |
Retrocopy | EECGRLDKIEAVQNHEKESVYKASLNLIEKHFSVEEEE<DQDIVPGTTSDSYTFQV<VDG<TPGAFN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018411 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000011598 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000026318 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019151 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000004445 | 2 retrocopies | |
Felis catus | ENSFCAG00000001936 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000027946 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000018256 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018362 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008569 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015329 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011391 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006274 | 14 retrocopies | |
Tupaia belangeri | ENSTBEG00000009007 | 3 retrocopies |