RetrogeneDB ID: | retro_tbel_4648 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_96100:3449..4239(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTBEG00000002918 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNR-LKYALTGDEVKKICMQRF |
MA.GPKKHLK..AAPKHW.LDKLT.VFA..PSTGPHKLRE.LP.IIFLR...LKYALTGDEVKKI.MQ.F | |
Retrocopy | MAHGPKKHLKQTAAPKHWVLDKLTSVFASCPSTGPHKLRE*LPFIIFLRKK>LKYALTGDEVKKIYMQ*F |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKVRTDI.Y.AGFMDVISIDKT.ENF.LIYD.KGR.AVH.ITPEEAKYKLCK.RKIFVGTKGIPHL | |
Retrocopy | IKIDGKVRTDIAYHAGFMDVISIDKTRENFHLIYDIKGRVAVHCITPEEAKYKLCKMRKIFVGTKGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH |
VTHDA.TI.YPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTG.ANL.RIGVITNRERHPGSFDV.H | |
Retrocopy | VTHDAHTICYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGHANLKRIGVITNRERHPGSFDVAH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VKD.NGNSFAT..SNIFVI.KGNKPW..LPRGKGIRLTIAEERDKRLAAKQSSG | |
Retrocopy | VKDPNGNSFATQPSNIFVISKGNKPWVYLPRGKGIRLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |