RetrogeneDB ID: | retro_fcat_290 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:206104837..206105577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSFCAG00000012041 | ||
Aliases: | RPS4, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705] |
Percent Identity: | 78.31 % |
Parental protein coverage: | 94.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAG |
.H..LD.LTGVFAPRPSTGPHK.RECL.LIIFL.NRLK.AL.GDEVKKICMQ.FIKIDGKV.TDITY..G | |
Retrocopy | QHCTLDELTGVFAPRPSTGPHKPRECLALIIFLKNRLKCALAGDEVKKICMQCFIKIDGKVQTDITYSNG |
Parental | FMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIK |
FMDV.SI.KTGE.F.LI..TKG.FA.H.I.PEE.KYKLCKVRKIFVGTKG..HLV.HDA.TI.YPDP.I. | |
Retrocopy | FMDV-SIHKTGEYFHLICNTKGHFAIHWIAPEETKYKLCKVRKIFVGTKGLLHLVIHDAGTICYPDPFIE |
Parental | VNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNI |
V.DTIQIDL.TGK.TD.IKFDTGNLCMVT.G.NLGRIGVI.NRERH.GSFDVVHVKD.NG.SFAT.LSNI | |
Retrocopy | VTDTIQIDLQTGKFTDSIKFDTGNLCMVTRGVNLGRIGVIINRERHAGSFDVVHVKDVNGSSFATQLSNI |
Parental | FV-IGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
F..I.K.NKPWISL..G....LTIAEERDKRLA..QSSG | |
Retrocopy | FI<IDKSNKPWISLSCGNDVCLTIAEERDKRLATRQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 209 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 796 .64 RPM |
SRP017611_liver | 0 .20 RPM | 316 .51 RPM |