RetrogeneDB ID: | retro_mmul_97 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:122775869..122776664(+) | ||
Located in intron of: | ENSMMUG00000011966 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029338 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4Y1 | ||
Ensembl ID: | ENSMMUG00000003295 | ||
Aliases: | RPS4Y1, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:RefSeq peptide;Acc:NP_001252551] |
Percent Identity: | 98.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLKRV.APKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI | |
Retrocopy | MARGPKKHLKRVVAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGF-MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
KIDGKVRTDITYPAGF.MD.ISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL | |
Retrocopy | KIDGKVRTDITYPAGFIMDIISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH |
VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH | |
Retrocopy | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VKDANGNSFAT.LSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG | |
Retrocopy | VKDANGNSFATQLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 51 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 129 .31 RPM |
SRP007412_cerebellum | 0 .06 RPM | 36 .23 RPM |
SRP007412_heart | 0 .12 RPM | 82 .85 RPM |
SRP007412_kidney | 0 .12 RPM | 77 .70 RPM |
SRP007412_liver | 0 .12 RPM | 92 .82 RPM |
SRP007412_testis | 0 .04 RPM | 10 .06 RPM |