RetrogeneDB ID: | retro_fcat_1562 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:71684580..71684987(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSFCAG00000012041 | ||
Aliases: | RPS4, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705] |
Percent Identity: | 73.19 % |
Parental protein coverage: | 52.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRL-KYALTGDEVKKICMQRFI |
A.GPKK.LK.VAAP...MLD.L.G.FAP.PST.PHKLR..L.LII.L..RL..YALTG.EVKKICM..FI | |
Retrocopy | ACGPKKPLKHVAAPERRMLD*LIGMFAPHPSTSPHKLRDHL-LIISLKIRL<RYALTGREVKKICM*CFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH |
KID.KV.TD.TYPAGF.DVISIDKTGENF.LIYDTKG.FAVH.I.P.EAKYKLCK...IF.G.KG.PH | |
Retrocopy | KIDDKVHTDTTYPAGFTDVISIDKTGENFCLIYDTKGHFAVHQISPKEAKYKLCKMITIFMGIKGMPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 209 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 796 .64 RPM |
SRP017611_liver | 0 .10 RPM | 316 .51 RPM |