Parental gene:

RPS4X, ENSTBEG00000002918

Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_148361:41341..46724(-)


>ENSTBEG00000002918
ATGGCTCGGGGCCCTAAGAAGCATCTGAAGCGGGTTGCAGCTCCAAAACATTGGATGCTAGATAAATTGACCGGTGTGTT
TGCCCCTCGTCCATCCACTGGTCCCCACAAGCTGAGAGAATGTCTTCCTCTCATCATTTTCCTAAGGAACAGACTTAAGT
ACGCTTTAACAGGAGACGAAGTAAAGAAGATCTGCATGCAGCGGTTCATTAAGATTGATGGCAAAGTCCGTACTGACATA
ACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACCGGAGAGAATTTCCGTCTGATCTATGACACCAAGGG
TCGTTTTGCTGTCCATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAAATCTTTGTGGGCACAA
AAGGAATCCCTCATTTGGTGACGCATGATGCTCGTACCATCCGCTACCCAGATCCTCTCATCAAGGTGAACGACACCATT
CAGATTGATTTGGAGACTGGCAAGATTACTGATTTTATCAAGTTTGATACCGGTAACCTGTGTATGGTGACAGGAGGTGC
TAACTTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGGCATCCTGGCTCTTTTGATGTGGTTCATGTGAAAGATGCCA
ATGGCAACAGTTTTGCCACTCGGCTCTCCAACATTTTTGTTATTGGCAAAGGAAACAAGCCATGGATTTCTCTTCCCCGG
GGAAAAGGTATCCGCCTCACCATTGCCGAAGAGAGAGACAAGAGACTGGCAGCCAAACAGAGCAGTGGGTGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2one 1 retrogene
retro_acar_82,
Bos taurus ENSBTAG00000018800 ortholog_one2one 5 retrogenes
retro_btau_119, retro_btau_125, retro_btau_146, retro_btau_33, retro_btau_76,
Canis familiaris ENSCAFG00000017151 possible_ortholog 2 retrogenes
retro_cfam_165, retro_cfam_194,
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Felis catus ENSFCAG00000012041 ortholog_one2one 11 retrogenes
retro_fcat_1155, retro_fcat_1498, retro_fcat_1562, retro_fcat_1751, retro_fcat_1773, retro_fcat_2024, retro_fcat_229, retro_fcat_290, retro_fcat_454, retro_fcat_563, retro_fcat_766,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Meleagris gallopavo ENSMGAG00000009671 ortholog_one2many 1 retrogene
retro_mgal_3,
Macaca mulatta ENSMMUG00000003295 ortholog_one2one 7 retrogenes
retro_mmul_1243, retro_mmul_1589, retro_mmul_1895, retro_mmul_1999, retro_mmul_2338, retro_mmul_43, retro_mmul_97,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
retro_rnor_135,
Vicugna pacos ENSVPAG00000010952 ortholog_one2one 4 retrogenes
retro_vpac_244, retro_vpac_460, retro_vpac_604, retro_vpac_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_310 77.78 57.41
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2. retro_tbel_511 82.50 75.67
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3. retro_tbel_877 60.38 79.47
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4. retro_tbel_1108 67.60 66.54
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5. retro_tbel_1367 70.85 74.90
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6. retro_tbel_1465 77.58 61.22
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7. retro_tbel_1798 80.82 83.27
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8. retro_tbel_2241 80.08 98.86
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9. retro_tbel_2659 93.16 100.00
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10. retro_tbel_2711 90.53 100.00
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11. retro_tbel_2715 93.92 100.00
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12. retro_tbel_2722 86.16 60.08
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13. retro_tbel_2743 85.78 85.17
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14. retro_tbel_2944 73.31 100.00
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15. retro_tbel_3172 86.90 86.31
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16. retro_tbel_3232 77.19 64.64
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17. retro_tbel_4263 91.07 63.50
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18. retro_tbel_4569 84.03 100.00
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19. retro_tbel_4572 94.72 100.00
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20. retro_tbel_4648 87.50 100.00
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Download FASTA sequences of all ENSTBEG00000002918 retrocopies