RetrogeneDB ID: | retro_amel_1318 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193193.1:45924..46771(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000018411 | ||
Aliases: | None | ||
Description: | Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:D2HQA5] |
Percent Identity: | 78.82 % |
Parental protein coverage: | 53.69 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | LDAVEQILPTLVRLLHHDDPEVLADTCWAI-SYLTDGPNERIEMVVKTGVVPQLVKLLGATELPIVTPAL |
LD..E.ILPT.V.LLHHDDPEVL.DTCWAI.SYL..GPNE.IE.VVKT.VVPQLVKLLG.TELPIVT.AL | |
Retrocopy | LDEFE*ILPTSVHLLHHDDPEVLEDTCWAI<SYLILGPNEWIEIVVKTEVVPQLVKLLGVTELPIVTLAL |
Parental | RAIG-NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSN-ITAGRQDQIQQVVNHGLVPFL |
RAI..NIVTGTDEQTQVVIDAGALA.FPSLL.NPKTNIQKEATWTMS...T.G.QDQIQ.VVNHGLVPFL | |
Retrocopy | RAIE<NIVTGTDEQTQVVIDAGALAIFPSLLMNPKTNIQKEATWTMSS<FTTGHQDQIQKVVNHGLVPFL |
Parental | VGVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAVSNIFQAAE |
.GVL..ADFKTQKE..WAV...TSG.TV.QI.YL.HCGIIE...NL.TAKD...ILVILDA.SNIFQAAE | |
Retrocopy | IGVLAEADFKTQKETIWAVAKHTSGRTVVQIGYLIHCGIIER*TNLSTAKDIRSILVILDATSNIFQAAE |
Parental | KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLNLIEKYFS-VEEEEDQNVVPETTSEGYTFQVQD |
KLGETEKLSIMI.EC.GLDK.E.L.NHENESVYK.SLNLIE.Y....E.E.DQNVV.ETTSE.YTFQVQD | |
Retrocopy | KLGETEKLSIMIKEC*GLDKMEVLRNHENESVYKGSLNLIETYLC>EEKE-DQNVVLETTSENYTFQVQD |
Parental | GTPGTFNF |
GT.GTF.F | |
Retrocopy | GTSGTFSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |