RetrogeneDB ID: | retro_dnov_2279 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_60574:3857..4564(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000019151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.65 % |
Parental protein coverage: | 58.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VVPQLVKLLGATQLPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNSKNNIQKEATWTMSNIT |
VVPQLVKLLGA..LPIVTPA.RA.GNIVTGTD.QTQ.V.DAGALA.FPS.LTN.K.NIQKEATWTMSNIT | |
Retrocopy | VVPQLVKLLGASELPIVTPAIRAMGNIVTGTDHQTQDVVDAGALAIFPSPLTNFKTNIQKEATWTMSNIT |
Parental | AGRQDQIQQVVNHGLVPFLVSVLSQAEFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKD |
AG.Q.Q.QQVVNH..VPFLVSVLS.A.FKTQKE.VWAVTNY.SG.TVEQIVYL.HC.IIEPLMNLLTAKD | |
Retrocopy | AGHQNQMQQVVNHEVVPFLVSVLSKADFKTQKEGVWAVTNYASGRTVEQIVYLFHCDIIEPLMNLLTAKD |
Parental | TKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEED |
TKIILVILDAISNIF.AAEKLGETEK..IMIEEC.GLDK.EALQNHENESVYKASLSLIEKYFSVEEE.D | |
Retrocopy | TKIILVILDAISNIF*AAEKLGETEKCNIMIEECRGLDKTEALQNHENESVYKASLSLIEKYFSVEEEDD |
Parental | -QNVVPETTSEGYTFQVQDGTPGTFNF |
..NVVPETTSEGYTFQVQDG.P..FNF | |
Retrocopy | <LNVVPETTSEGYTFQVQDGIPRNFNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 30 .34 RPM |
SRP012922_cerebellum | 0 .00 RPM | 8 .94 RPM |
SRP012922_heart | 0 .00 RPM | 8 .82 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .30 RPM |
SRP012922_liver | 0 .00 RPM | 4 .02 RPM |
SRP012922_lung | 0 .00 RPM | 9 .77 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .71 RPM |
SRP012922_spleen | 0 .00 RPM | 33 .99 RPM |