RetrogeneDB ID: | retro_dnov_1184 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_15940:87262..88472(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000019151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.62 % |
Parental protein coverage: | 99.75 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | VSFLDR-TDCTPIQFESAWALTNIASGTSEQTKAVVDGGGIPAFVSLLASPHAHISEQAVWALGNIAGDG |
VSFL.R.T.CTPIQ.E...ALTNIASGTSEQTKAVVDGG.I.AF.SLLAS.H.H..EQA.W.LGNIAGDG | |
Retrocopy | VSFLVR<TACTPIQLEPDLALTNIASGTSEQTKAVVDGGTISAFISLLASLHVHLWEQALWTLGNIAGDG |
Parental | SAFRDLVIKYGAIDPLLALLAPPNMSSLAYSYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLIRLLHHD |
S.F.DLVIK.G.IDPLL.LLA.P..SS...SYL..L.WT.SNLC..KNP.P.LDAVEQI.PTL..L.H.D | |
Retrocopy | SSFQDLVIKSGEIDPLLDLLAVPEISS*SHSYLCKLSWTFSNLC*SKNPEPLLDAVEQIFPTLVHL-HPD |
Parental | DPEVLTDTCWAISYLTDGPNERIEMVVKTGVVPQLVKLLGA-TQLPIVTPALRAIGNIVTGTDEQTQVVI |
D..VL.DTCWA.SYLTDGP...IEM..K.GVVPQLVKLLGA...LP..TPAL...GN.VTGTDEQTQVVI | |
Retrocopy | DL*VLVDTCWATSYLTDGPKKCIEMLEKIGVVPQLVKLLGA<SELPSMTPALSTKGNNVTGTDEQTQVVI |
Parental | DAGALAVFPSLLTNSKNNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSQAEFKTQKEAVWAVT |
D.GAL.VFP.LL.NSK.NIQK.A.WTMSNIT.G.Q.QIQQVVNHGLVPFL.SVLS...FKTQKEAVWAVT | |
Retrocopy | DEGALTVFPNLLINSKTNIQKAASWTMSNITVGHQYQIQQVVNHGLVPFLISVLSKEDFKTQKEAVWAVT |
Parental | NYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK |
NYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMI.EC.GLDK | |
Retrocopy | NYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIGECQGLDK |
Parental | IEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGTPGTFNF |
IE.LQNHENE.V.KA.LS..EKYFSV..E.DQNVVPETTSE.Y.FQVQDGT.GTFNF | |
Retrocopy | IEGLQNHENEFVFKA*LSFVEKYFSVKKEDDQNVVPETTSEVYSFQVQDGTLGTFNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 30 .34 RPM |
SRP012922_cerebellum | 0 .00 RPM | 8 .94 RPM |
SRP012922_heart | 0 .00 RPM | 8 .82 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .30 RPM |
SRP012922_liver | 0 .00 RPM | 4 .02 RPM |
SRP012922_lung | 0 .00 RPM | 9 .77 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .71 RPM |
SRP012922_spleen | 0 .00 RPM | 33 .99 RPM |