RetrogeneDB ID: | retro_mmul_1947 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:49510908..49511724(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSMMUG00000018256 | ||
Aliases: | None | ||
Description: | importin subunit alpha-2 [Source:RefSeq peptide;Acc:NP_001253040] |
Percent Identity: | 80.29 % |
Parental protein coverage: | 51.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSTNENANTPAARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNN |
.STNENAN.PAA.L.RFKNK.KDSTEMR..RIE.NV.LRKAKKDDQMLKRRN.SSFPD.A.S.L.EN..N | |
Retrocopy | ISTNENANIPAA*LNRFKNK*KDSTEMRCHRIEINVKLRKAKKDDQMLKRRNASSFPDAAASLLEENLKN |
Parental | QGTVNWSVDDIVKGINSSNVENQLQATQAA-RKLLSREKQPPIDSIIRAGLIPKFVSFLGRTDCSPIQFE |
QGTVNW.VDDIV....S.NVE.QLQATQAA..KLLSREKQ.P.D.II.AGLIPK.VSFLGRTDCSPI.FE | |
Retrocopy | QGTVNWFVDDIVNSTKSNNVESQLQATQAA<VKLLSREKQSPTDNIIWAGLIPKSVSFLGRTDCSPIPFE |
Parental | SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPL |
SAWALTNIAS.TSE.TKAVVDGGAIPAFIS.LASP.AHISEQAVW.LGN.AGDG.VFRDLVIKYGAVDPL | |
Retrocopy | SAWALTNIASRTSE*TKAVVDGGAIPAFISMLASPQAHISEQAVWTLGNTAGDGLVFRDLVIKYGAVDPL |
Parental | LALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAV-EQILPTLVRLLHHDDPEVLADTC |
L.LLAVPDMSSL.CGYL..LTWTLS..C...NPAP..DAV..QI.PTL.RLLHHDDPEVL.DTC | |
Retrocopy | LVLLAVPDMSSLVCGYLCHLTWTLSIVCCYNNPAPLLDAV>DQIFPTLARLLHHDDPEVLTDTC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 11 .43 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .39 RPM |
SRP007412_heart | 0 .00 RPM | 5 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .04 RPM |
SRP007412_liver | 0 .00 RPM | 5 .15 RPM |
SRP007412_testis | 0 .00 RPM | 230 .27 RPM |