Parental gene:

RPS6, ENSAMEG00000002925

Aliases:None
Description:40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:F2X207]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192605.1:266713..270519(-)


>ENSAMEG00000002925
ATGAAGCTGAACATCTCCTTCCCAGCTACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAGCGCAAACTTCGTACGTT
TTATGAGAAGCGTATGGCCACAGAAGTTGCTGCCGATGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTTCGAATCAGTG
GTGGCAATGACAAACAAGGCTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTGCTGAGTAAGGGG
CATTCTTGCTATAGGCCGAGGAGGACTGGAGAGAGAAAACGCAAATCTGTACGGGGTTGCATTGTGGATGCCAATCTCAG
TGTTCTCAACTTGGTCATTGTAAAAAAAGGGGAGAAGGATATTCCTGGACTCACTGATACTACTGTGCCTCGTCGCCTGG
GGCCCAAAAGAGCCAGCAGAATCCGCAAGCTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTGAGAAAG
CCCCTAAACAAAGAAGGTAAGAAACCTAGAACCAAAGCGCCCAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAGCA
CAAACGTCGGCGTATTGCTTTGAAGAAACAGCGCACTAAGAAAAATAAGGAAGAGGCCGCAGAATATGCTAAACTTTTGG
CCAAGAGAATGAAGGAGGCCAAAGAAAAACGTCAGGAACAGATTGCCAAGAGACGGAGGCTGTCCTCTCTGAGAGCTTCT
ACCTCTAAGTCGGAGTCCAGTCAAAAATGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Canis familiaris ENSCAFG00000001615 possible_ortholog 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2many 1 retrogene
retro_dnov_1192,
Equus caballus ENSECAG00000016190 ortholog_one2one 5 retrogenes
retro_ecab_175, retro_ecab_312, retro_ecab_603, retro_ecab_771, retro_ecab_861,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Felis catus ENSFCAG00000002541 ortholog_one2one 26 retrogenes
retro_fcat_1082, retro_fcat_1108, retro_fcat_1154, retro_fcat_1262, retro_fcat_1373, retro_fcat_1642, retro_fcat_1679, retro_fcat_1760, retro_fcat_1791, retro_fcat_1934, retro_fcat_1937, retro_fcat_1963, retro_fcat_198, retro_fcat_238, retro_fcat_328, retro_fcat_358, retro_fcat_380, retro_fcat_392, retro_fcat_493, retro_fcat_659, retro_fcat_738, retro_fcat_750, retro_fcat_850, retro_fcat_894, retro_fcat_912, retro_fcat_968,
Gorilla gorilla ENSGGOG00000002652 ortholog_one2one 13 retrogenes
retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Macaca mulatta ENSMMUG00000003412 ortholog_one2one 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Rattus norvegicus ENSRNOG00000049025 ortholog_one2one 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,
Sus scrofa ENSSSCG00000005169 ortholog_one2one 6 retrogenes
retro_sscr_187, retro_sscr_425, retro_sscr_645, retro_sscr_856, retro_sscr_940, retro_sscr_983,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_189 67.68 64.66
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2. retro_amel_312 75.79 100.00
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3. retro_amel_334 80.59 94.78
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4. retro_amel_382 79.70 53.01
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5. retro_amel_510 69.92 99.60
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6. retro_amel_568 80.75 63.86
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7. retro_amel_657 72.91 100.00
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8. retro_amel_841 72.00 59.84
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9. retro_amel_1040 60.87 54.62
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10. retro_amel_1250 60.41 77.91
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11. retro_amel_1384 81.61 69.08
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12. retro_amel_1526 80.45 53.41
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13. retro_amel_1646 72.89 66.27
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14. retro_amel_1676 68.92 98.39
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Download FASTA sequences of all ENSAMEG00000002925 retrocopies