RetrogeneDB ID: | retro_fcat_1642 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:74844804..74845543(-) | ||
Located in intron of: | ENSFCAG00000014368 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG-FPMK-QGVLTH |
LN.S.PATGCQ.LIEVDDE.KL.TFYEK.MATEV...ALGEEWKGYVVRISGGNDKQG.FP.....VL.H | |
Retrocopy | LNTSCPATGCQELIEVDDECKLHTFYEKYMATEVGIGALGEEWKGYVVRISGGNDKQG<FPHE<SSVLIH |
Parental | GRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKG-EKDIPGLTDTTVPRRLGPKRAS |
G.V.LLLS.G.SCYRPRRTG..K..SV.G.IVDANLSVL.L..VKKG.EKDIPGL.DTTVPR.LGPKRAS | |
Retrocopy | GHVCLLLSQGYSCYRPRRTGGKKCESVWGYIVDANLSVLHLITVKKG>EKDIPGLSDTTVPRYLGPKRAS |
Parental | RIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY |
RI.KLF.LSKEDDV...VVRK.LNKEGKKPR.KAPK.Q.LVTP.VLQHK....ALKKQ.TKKNKEEA.EY | |
Retrocopy | RIHKLFDLSKEDDVH*HVVRKTLNKEGKKPRIKAPKTQCLVTPCVLQHKGQHTALKKQCTKKNKEEASEY |
Parental | AKLLAKRMKEAKE-KRQEQIAKRRRLSSLRASTSKSESSQK |
.KLLAKR.KEAKE.K.QEQIAKRRR.SS.R.STS.SES.QK | |
Retrocopy | VKLLAKRLKEAKE<KHQEQIAKRRRVSSPRTSTSMSESNQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .10 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |