Parental gene:

ENSFCAG00000002541

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:D4:46425607..46429428(-)


>ENSFCAG00000002541
CTGAACATCTCTTTCCCAGCTACTGGCTGCCAGAAACTTATTGAAGTGGACGATGAACGCAAACTTCGTACCTTTTATGA
GAAGCGAATGGCCACAGAAGTTGCTGCTGATGCTTTAGGGGAAGAATGGAAGGGTTACGTGGTACGAATCAGTGGTGGCA
ATGACAAACAAGGCTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTACTGCTGAGTAAGGGACATTCC
TGCTACCGACCACGGAGGACTGGAGAAAGAAAGCGCAAATCTGTCCGGGGTTGCATCGTGGATGCCAATCTCAGTGTTCT
CAACTTGGTCATTGTGAAAAAAGGGGAGAAGGATATTCCTGGACTCACTGATACTACTGTGCCTCGTCGCCTGGGGCCCA
AGAGAGCTAGCAGAATCCGCAAGCTTTTCAATCTCTCAAAGGAAGATGATGTCCGCCAGTATGTTGTGAGAAAGCCCCTA
AATAAAGAAGGTAAGAAACCTCGAACCAAAGCACCCAAGATACAGCGTCTTGTTACTCCACGTGTCCTCCAACACAAACG
TCGGCGCATTGCTTTGAAGAAGCAGCGCACAAAGAAAAACAAGGAAGAGGCTGCAGAATATGCTAAGCTTTTGGCCAAGA
GAATGAAGGAGGCCAAAGAAAAGCGCCAGGAACAGATTGCCAAGAGACGGAGGCTGTCTTCTCTGAGAGCTTCTACCTCA
AAGTCTGAGTCCAGTCAAAAA

Library Parental gene expression (RPM)
SRP017611_brain 82 .41 RPM
SRP017611_kidney 411 .51 RPM
SRP017611_liver 228 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Ailuropoda melanoleuca ENSAMEG00000002925 ortholog_one2one 14 retrogenes
retro_amel_1040, retro_amel_1250, retro_amel_1384, retro_amel_1526, retro_amel_1646, retro_amel_1676, retro_amel_189, retro_amel_312, retro_amel_334, retro_amel_382, retro_amel_510, retro_amel_568, retro_amel_657, retro_amel_841,
Canis familiaris ENSCAFG00000001615 possible_ortholog 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2many 1 retrogene
retro_dnov_1192,
Equus caballus ENSECAG00000016190 ortholog_one2one 5 retrogenes
retro_ecab_175, retro_ecab_312, retro_ecab_603, retro_ecab_771, retro_ecab_861,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Gorilla gorilla ENSGGOG00000002652 ortholog_one2one 13 retrogenes
retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Macaca mulatta ENSMMUG00000003412 ortholog_one2one 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Rattus norvegicus ENSRNOG00000049025 ortholog_one2one 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,
Sus scrofa ENSSSCG00000005169 ortholog_one2one 6 retrogenes
retro_sscr_187, retro_sscr_425, retro_sscr_645, retro_sscr_856, retro_sscr_940, retro_sscr_983,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_198 81.25 57.49
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_fcat_238 66.40 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_fcat_328 69.40 53.44
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_fcat_358 74.80 51.42
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_fcat_380 69.53 50.61
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_fcat_392 68.50 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_fcat_493 77.16 78.95
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_fcat_659 70.65 73.68
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_fcat_738 74.10 55.87
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_fcat_750 87.60 100.00
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_fcat_850 64.82 78.14
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_fcat_894 81.78 90.69
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_fcat_912 71.43 96.36
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_fcat_968 75.17 57.89
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_fcat_1082 89.24 100.00
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_fcat_1108 79.04 66.40
Please wait, loading
Please wait, loading
Please wait, loading
17. retro_fcat_1154 76.33 68.02
Please wait, loading
Please wait, loading
Please wait, loading
18. retro_fcat_1262 79.28 100.00
Please wait, loading
Please wait, loading
Please wait, loading
19. retro_fcat_1373 75.74 53.85
Please wait, loading
Please wait, loading
Please wait, loading
20. retro_fcat_1642 77.29 100.00
Please wait, loading
Please wait, loading
Please wait, loading
21. retro_fcat_1679 70.90 54.25
Please wait, loading
Please wait, loading
Please wait, loading
22. retro_fcat_1760 62.27 87.45
Please wait, loading
Please wait, loading
Please wait, loading
23. retro_fcat_1791 67.73 87.45
Please wait, loading
Please wait, loading
Please wait, loading
24. retro_fcat_1934 76.31 100.00
Please wait, loading
Please wait, loading
Please wait, loading
25. retro_fcat_1937 60.76 93.93
Please wait, loading
Please wait, loading
Please wait, loading
26. retro_fcat_1963 77.73 94.33
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSFCAG00000002541 retrocopies