RetrogeneDB ID: | retro_ggor_965 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:82153280..82153732(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSGGOG00000002652 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:G3QJL6] |
Percent Identity: | 57.32 % |
Parental protein coverage: | 61.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | KSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRR-LGPKRASRIRKLFNLSKEDDVRQYVVRKPLN |
KSV..C..DANLSVLNL.I..KG.K.IPGLTD.T.P...LG....SRI.K.F.L..ED...Q..VRKPLN | |
Retrocopy | KSVLDCTMDANLSVLNLTIG*KGKKNIPGLTDATGPLS<LGLRTDSRIHKHFHLP*EDHEHQCFVRKPLN |
Parental | KEGKKPRTKA-PKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEA-AEYAKLLAKRMKEAKE-KRQEQIAK |
KE.K.P..KA.P....LV.P.V.QHK...IALKKQ....NK....AE.A.LL.KRM.E.K....QEQIAK | |
Retrocopy | KESKRPGSKA>PRFS-LVIPCVQQHKCTSIALKKQHI*ENKRLQ>AEHAELLVKRMQEVKQ<NCQEQIAK |
Parental | RR-RLSSLRASTSKSES |
R...LSSL..STSK..S | |
Retrocopy | RQ<ELSSLINSTSKFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 237 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 296 .35 RPM |
SRP007412_heart | 0 .00 RPM | 178 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 713 .22 RPM |
SRP007412_liver | 0 .00 RPM | 518 .06 RPM |
SRP007412_testis | 0 .00 RPM | 466 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1231 |
Pan troglodytes | retro_ptro_845 |
Pongo abelii | retro_pabe_1024 |