RetrogeneDB ID: | retro_fcat_1760 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:58104709..58105359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.27 % |
Parental protein coverage: | 87.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
LN..FPATGCQKLI.VDD..KL.TF.EKR.ATEVAA.AL.EEWKG.VV.I.G.NDKQGFP.KQGV.THGR | |
Retrocopy | LNLCFPATGCQKLIDVDDVCKLLTFSEKRVATEVAANALREEWKGSVVQITGRNDKQGFPTKQGVSTHGR |
Parental | VRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKK-GEKDIPGLTDTT-VPRRLGPKRASR |
...LL.KG.SC.R.RRTGERK..S.....VDANL.VLNLVIVKK...KD.PG........R.LGP.RA.. | |
Retrocopy | AHPLLRKGPSCSRARRTGERKHTSGSSGTVDANLGVLNLVIVKK>WGKDTPGVACVI<LSRHLGP*RAGG |
Parental | IRKLFNLSKEDDVRQYVVRKPLNKEGKK-PRTKAPKIQRLVTPRVLQHKRRRIALKK-QRTKKNKEEAAE |
I.K.F.LSKED.........PL.........TK.P.IQRLVTPRVLQH....IALKK....KKNKEEAAE | |
Retrocopy | IHKPFSLSKEDAATSML*DSPLTRTVRNLVWTKVPWIQRLVTPRVLQHNHGCIALKK<KHMKKNKEEAAE |
Parental | YAKLLAKRMK |
Y.KLL....K | |
Retrocopy | YVKLLYQENK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |